Hs3st5 (heparan sulfate-glucosamine 3-sulfotransferase 5) - Rat Genome Database

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Gene: Hs3st5 (heparan sulfate-glucosamine 3-sulfotransferase 5) Ictidomys tridecemlineatus
Analyze
Symbol: Hs3st5
Name: heparan sulfate-glucosamine 3-sulfotransferase 5
RGD ID: 12711943
Description: ENCODES a protein that exhibits [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process, enzymatic modification (ortholog); negative regulation of coagulation (ortholog); protein sulfation (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); melanoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate-glucosamine 3-sulfotransferase 5, transcript variant X1; heparan sulfate-glucosamine 3-sulfotransferase 5, transcript variant X2; heparan sulfate-glucosamine 3-sulfotransferase 5, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946105,308,246 - 105,505,241 (-)NCBI
SpeTri2.0NW_0049366792,540,894 - 2,737,462 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Hs3st5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946105,308,246 - 105,505,241 (-)NCBI
SpeTri2.0NW_0049366792,540,894 - 2,737,462 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS3ST5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6114,055,596 - 114,343,023 (-)EnsemblGRCh38hg38GRCh38
GRCh386114,055,586 - 114,343,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376114,376,760 - 114,664,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366114,485,114 - 114,490,702 (-)NCBINCBI36hg18NCBI36
Build 346114,485,113 - 114,490,702NCBI
Celera6115,118,158 - 115,125,449 (-)NCBI
Cytogenetic Map6q21-q22.1NCBI
HuRef6111,953,620 - 111,960,911 (-)NCBIHuRef
CHM1_16114,639,638 - 114,646,928 (-)NCBICHM1_1
Hs3st5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391036,382,794 - 36,710,393 (+)NCBIGRCm39mm39
GRCm39 Ensembl1036,382,810 - 36,710,393 (+)Ensembl
GRCm381036,506,590 - 36,834,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1036,506,814 - 36,834,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371036,226,613 - 36,554,203 (+)NCBIGRCm37mm9NCBIm37
MGSCv361036,196,223 - 36,523,813 (+)NCBImm8
Celera1037,409,543 - 37,736,930 (+)NCBICelera
Cytogenetic Map10B1NCBI
Hs3st5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22040,106,876 - 40,417,661 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2040,106,876 - 40,417,653 (+)Ensembl
Rnor_6.02040,236,437 - 40,545,502 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,236,437 - 40,545,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02041,969,878 - 42,279,758 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42040,711,763 - 41,022,773 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12041,039,793 - 41,044,941 (+)NCBI
Celera2040,863,898 - 41,173,368 (+)NCBICelera
Cytogenetic Map20q12NCBI
Hs3st5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555262,636,579 - 2,652,405 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555262,418,217 - 2,652,025 (+)NCBIChiLan1.0ChiLan1.0
HS3ST5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16115,917,004 - 116,202,924 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6115,917,004 - 116,089,942 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06111,846,143 - 112,132,706 (-)NCBIMhudiblu_PPA_v0panPan3
HS3ST5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11270,137,232 - 70,387,797 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1270,140,802 - 70,388,174 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1269,884,392 - 70,134,790 (-)NCBI
ROS_Cfam_1.01271,019,134 - 71,268,571 (-)NCBI
UMICH_Zoey_3.11270,370,842 - 70,620,669 (-)NCBI
UNSW_CanFamBas_1.01270,209,266 - 70,461,102 (-)NCBI
UU_Cfam_GSD_1.01270,540,322 - 70,791,458 (-)NCBI
HS3ST5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl179,955,657 - 80,243,797 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1179,956,485 - 80,140,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2190,017,049 - 90,306,175 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HS3ST5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11359,486,748 - 59,774,673 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1359,598,298 - 59,774,953 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604031,859,012 - 32,137,822 (+)NCBIVero_WHO_p1.0
Hs3st5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248564,403,071 - 4,689,535 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005337425   ⟹   XP_005337482
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946105,308,246 - 105,505,241 (-)NCBI
SpeTri2.0NW_0049366792,540,894 - 2,737,462 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734637   ⟹   XP_021590312
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946105,308,246 - 105,505,241 (-)NCBI
SpeTri2.0NW_0049366792,540,894 - 2,737,462 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734638   ⟹   XP_021590313
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946105,308,246 - 105,505,241 (-)NCBI
SpeTri2.0NW_0049366792,540,894 - 2,737,462 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005337482   ⟸   XM_005337425
- UniProtKB: I3MWX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590313   ⟸   XM_021734638
- Sequence:
RefSeq Acc Id: XP_021590312   ⟸   XM_021734637
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025631 ENTREZGENE
Ensembl Protein ENSSTOP00000016618 ENTREZGENE
NCBI Gene Hs3st5 ENTREZGENE
UniProt I3MWX3 ENTREZGENE