Nectin2 (nectin cell adhesion molecule 2) - Rat Genome Database

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Gene: Nectin2 (nectin cell adhesion molecule 2) Ictidomys tridecemlineatus
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Symbol: Nectin2
Name: nectin cell adhesion molecule 2
RGD ID: 12711917
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acrosome assembly (ortholog); adhesion of symbiont to host (ortholog); cell part morphogenesis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); atherosclerosis (ortholog); FOUND IN apical junction complex (ortholog); cell surface (ortholog); cell-cell contact zone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nectin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,123,454 - 17,151,649 (+)NCBI
SpeTri2.0NW_0049367061,470,910 - 1,498,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Nectin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,123,454 - 17,151,649 (+)NCBI
SpeTri2.0NW_0049367061,470,910 - 1,498,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NECTIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1944,846,175 - 44,889,223 (+)EnsemblGRCh38hg38GRCh38
GRCh381944,846,297 - 44,889,223 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371945,349,554 - 45,392,480 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,041,233 - 50,084,325 (+)NCBINCBI36hg18NCBI36
Build 341950,041,473 - 50,074,034NCBI
Celera1942,153,754 - 42,196,828 (+)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1941,779,725 - 41,822,792 (+)NCBIHuRef
CHM1_11945,352,150 - 45,395,259 (+)NCBICHM1_1
Nectin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,450,569 - 19,483,498 (-)NCBIGRCm39mm39
GRCm39 Ensembl719,450,569 - 19,484,408 (-)Ensembl
GRCm38719,716,644 - 19,749,573 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,716,644 - 19,750,483 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,301,993 - 20,334,922 (-)NCBIGRCm37mm9NCBIm37
MGSCv36718,875,183 - 18,907,991 (-)NCBImm8
Celera717,122,731 - 17,155,753 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Nectin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2179,372,123 - 79,407,379 (-)NCBI
Rnor_6.0 Ensembl180,631,450 - 80,666,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0180,631,449 - 80,666,617 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0181,896,927 - 81,932,099 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,021,831 - 79,059,686 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1179,099,942 - 79,137,797 (-)NCBI
Celera173,831,315 - 73,865,827 (-)NCBICelera
Cytogenetic Map1q21NCBI
Nectin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555551,959,702 - 1,985,679 (+)NCBIChiLan1.0ChiLan1.0
NECTIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11950,399,367 - 50,443,024 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,399,668 - 50,443,024 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01941,794,037 - 41,837,047 (+)NCBIMhudiblu_PPA_v0panPan3
NECTIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,543,140 - 110,569,168 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,543,247 - 110,569,143 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,024,087 - 110,050,106 (-)NCBI
ROS_Cfam_1.01111,072,925 - 111,094,462 (-)NCBI
UMICH_Zoey_3.11110,747,557 - 110,773,459 (-)NCBI
UNSW_CanFamBas_1.01110,383,024 - 110,409,042 (-)NCBI
UU_Cfam_GSD_1.01111,251,830 - 111,278,287 (-)NCBI
NECTIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1651,317,386 - 51,358,665 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,217,254 - 47,335,651 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NECTIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,320,791 - 38,361,419 (+)NCBI
ChlSab1.1 Ensembl638,320,933 - 38,361,742 (+)Ensembl
Vero_WHO_p1.0NW_02366607317,889,617 - 17,931,227 (+)NCBI
Nectin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249071,713,786 - 1,739,158 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338200   ⟹   XP_005338257
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934917,123,455 - 17,151,649 (+)NCBI
SpeTri2.0NW_0049367061,470,911 - 1,498,986 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735184   ⟹   XP_021590859
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934917,123,454 - 17,151,649 (+)NCBI
SpeTri2.0NW_0049367061,470,910 - 1,498,986 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338257 (Get FASTA)   NCBI Sequence Viewer  
  XP_021590859 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338257   ⟸   XM_005338200
- Peptide Label: isoform X1
- UniProtKB: I3MCQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590859   ⟸   XM_021735184
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008997 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008062 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008998 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Nectin-2 UniProtKB/TrEMBL
NCBI Gene Nectin2 ENTREZGENE
PANTHER PTHR47387:SF1 UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt I3MCQ7 ENTREZGENE, UniProtKB/TrEMBL