Acot13 (acyl-CoA thioesterase 13) - Rat Genome Database

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Gene: Acot13 (acyl-CoA thioesterase 13) Ictidomys tridecemlineatus
Analyze
Symbol: Acot13
Name: acyl-CoA thioesterase 13
RGD ID: 12711194
Description: ENCODES a protein that exhibits fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN negative regulation of cold-induced thermogenesis (ortholog); protein homotetramerization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-coenzyme A thioesterase 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049462,661,830 - 2,672,448 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936671952,652 - 959,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Acot13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049462,661,830 - 2,672,448 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936671952,652 - 959,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACOT13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38624,667,077 - 24,705,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl624,667,035 - 24,705,065 (+)EnsemblGRCh38hg38GRCh38
GRCh37624,667,305 - 24,705,274 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36624,775,254 - 24,809,921 (+)NCBINCBI36Build 36hg18NCBI36
Build 34624,775,253 - 24,809,919NCBI
Celera625,900,605 - 25,938,673 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef624,616,687 - 24,654,727 (+)NCBIHuRef
CHM1_1624,671,407 - 24,709,441 (+)NCBICHM1_1
T2T-CHM13v2.0624,537,472 - 24,576,170 (+)NCBIT2T-CHM13v2.0
Acot13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391325,001,938 - 25,015,472 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1325,001,931 - 25,015,523 (-)EnsemblGRCm39 Ensembl
GRCm381324,817,955 - 24,831,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1324,817,948 - 24,831,540 (-)EnsemblGRCm38mm10GRCm38
MGSCv371324,909,824 - 24,923,358 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361324,825,420 - 24,838,954 (-)NCBIMGSCv36mm8
Celera1325,048,620 - 25,062,154 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map1310.69NCBI
Acot13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81740,668,404 - 40,680,876 (+)NCBIGRCr8
mRatBN7.21740,240,378 - 40,252,851 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1740,240,378 - 40,252,851 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1740,308,567 - 40,321,035 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01741,912,612 - 41,925,080 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01740,195,706 - 40,208,137 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01742,241,141 - 42,253,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1742,241,159 - 42,253,649 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,108,940 - 44,121,410 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,301,965 - 47,314,437 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11747,304,805 - 47,317,273 (+)NCBI
Celera1739,877,684 - 39,890,137 (+)NCBICelera
Cytogenetic Map17p11NCBI
Acot13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554832,361,087 - 2,374,957 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554832,360,758 - 2,375,071 (-)NCBIChiLan1.0ChiLan1.0
ACOT13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2539,318,823 - 39,353,344 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1635,318,284 - 35,352,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0624,505,104 - 24,542,577 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1624,837,145 - 24,872,121 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl624,837,145 - 24,873,037 (+)Ensemblpanpan1.1panPan2
ACOT13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13522,707,214 - 22,723,345 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3522,707,287 - 22,722,856 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3522,674,774 - 22,690,687 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03522,829,582 - 22,845,499 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3522,829,629 - 22,845,489 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13522,635,048 - 22,650,959 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03522,682,626 - 22,698,537 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03524,118,934 - 24,134,848 (+)NCBIUU_Cfam_GSD_1.0
ACOT13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl719,502,627 - 19,510,810 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1719,502,629 - 19,510,839 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2720,655,345 - 20,659,469 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACOT13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11747,552,817 - 47,582,875 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1747,552,916 - 47,582,897 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604424,597,609 - 24,628,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acot13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247562,350,671 - 2,363,475 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040282099   ⟹   XP_040138033
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049462,661,830 - 2,663,581 (-)NCBI
RefSeq Acc Id: XR_005732525
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049462,662,961 - 2,672,448 (-)NCBI
RefSeq Acc Id: XR_005732526
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049462,662,961 - 2,666,751 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040138033 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3288608 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040138033   ⟸   XM_040282099


Additional Information

Database Acc Id Source(s)
NCBI Gene Acot13 ENTREZGENE