Ikzf3 (IKAROS family zinc finger 3)

Gene: Ikzf3 (IKAROS family zinc finger 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Ikzf3

Name:

IKAROS family zinc finger 3

RGD ID:

12710851

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); histone deacetylase binding (inferred); identical protein binding (inferred); INVOLVED IN response to bacterium (ortholog); PARTICIPATES IN interleukin-2 signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); asthma (ortholog); Gastro-Enteropancreatic Neuroendocrine Tumor (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

IKAROS family zinc finger 3, transcript variant X1; IKAROS family zinc finger 3, transcript variant X2; IKAROS family zinc finger 3, transcript variant X3; IKAROS family zinc finger 3, transcript variant X4; IKAROS family zinc finger 3, transcript variant X5; IKAROS family zinc finger 3, transcript variant X6; IKAROS family zinc finger 3, transcript variant X7; IKAROS family zinc finger 3, transcript variant X8; zinc finger protein Aiolos

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,049,411 - 22,136,659 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,939,776 - 15,025,728 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,939,693 - 15,025,728 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

asthma (ISO)

Gastro-Enteropancreatic Neuroendocrine Tumor (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy 25 (ISO)

Immunodeficiency 84 (ISO)

lung non-small cell carcinoma (ISO)

rheumatoid arthritis (ISO)

small cell carcinoma (ISO)

systemic lupus erythematosus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of apoptotic process (IEA)

regulation of B cell differentiation (IEA)

regulation of B cell proliferation (IEA)

regulation of lymphocyte differentiation (IEA)

response to bacterium (IEA,ISO)

T cell differentiation (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

histone deacetylase binding (IEA)

identical protein binding (IEA)

metal ion binding (IEA)

promoter-specific chromatin binding (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA)

protein homodimerization activity (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

interleukin-2 signaling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ikzf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	22,049,411 - 22,136,659 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,939,776 - 15,025,728 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,939,693 - 15,025,728 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IKZF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	39,757,715 - 39,864,312 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	39,757,718 - 39,864,312 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	37,913,968 - 38,020,565 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	35,174,724 - 35,273,967 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	35,174,723 - 35,273,967	NCBI
Celera	17	34,581,293 - 34,680,706 (-)	NCBI		Celera
Cytogenetic Map	17	q12-q21.1	NCBI
HuRef	17	33,707,734 - 33,814,453 (-)	NCBI		HuRef
CHM1_1	17	38,149,697 - 38,256,153 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	40,621,278 - 40,728,035 (-)	NCBI		T2T-CHM13v2.0

Ikzf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	98,355,436 - 98,437,157 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	98,355,728 - 98,436,857 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	98,464,610 - 98,546,031 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	98,464,902 - 98,546,031 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	98,326,007 - 98,407,345 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	98,280,750 - 98,361,890 (-)	NCBI		MGSCv36	mm8
Celera	11	108,118,875 - 108,200,433 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.75	NCBI

Ikzf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	83,956,850 - 84,049,861 (-)	NCBI		GRCr8
mRatBN7.2	10	83,460,564 - 83,553,591 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	83,465,745 - 83,553,591 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	88,410,132 - 88,496,889 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	87,908,212 - 87,994,964 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	83,300,867 - 83,387,650 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	86,420,757 - 86,509,454 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	86,421,582 - 86,509,454 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	86,217,517 - 86,305,385 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	87,275,051 - 87,365,273 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	87,290,173 - 87,379,642 (-)	NCBI
Celera	10	82,213,424 - 82,301,795 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Ikzf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	14,484,132 - 14,536,916 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	14,483,669 - 14,571,108 (-)	NCBI	ChiLan1.0	ChiLan1.0

IKZF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,086,973 - 25,197,863 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	26,981,801 - 27,092,675 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	17,459,438 - 17,498,452 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	17,643,750 - 17,741,492 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	17,643,750 - 17,741,479 (+)	Ensembl	panpan1.1		panPan2

IKZF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	22,643,482 - 22,733,988 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	22,643,640 - 22,728,385 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	22,115,386 - 22,206,464 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	23,436,152 - 23,527,498 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	23,436,030 - 23,525,955 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	22,209,466 - 22,300,298 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	22,470,290 - 22,561,333 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	22,594,949 - 22,686,455 (+)	NCBI		UU_Cfam_GSD_1.0

IKZF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	22,466,414 - 22,562,312 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	22,466,386 - 22,562,320 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	22,924,772 - 23,014,066 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IKZF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	66,302,107 - 66,399,152 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	66,303,117 - 66,397,765 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	37,211,681 - 37,307,976 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ikzf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	3,290,078 - 3,345,533 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	3,222,170 - 3,347,079 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000003799 ⟹ ENSSTOP00000003405

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	14,939,776 - 15,025,728 (-)	Ensembl

RefSeq Acc Id:

XM_005321788 ⟹ XP_005321845

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,049,411 - 22,136,659 (+)	NCBI
SpeTri2.0	NW_004936490	14,939,693 - 15,025,728 (-)	NCBI

Sequence:

show sequence

GCACGTGGAGCAGCCGGGCAGCCAGAGTGGCTGCTCCAGACCCGCGGAGCCCGGCGGCGACATG
GAAGATATACAATCAAATGTGGAACTGAAAAGCACTCAGGAGCAGCCTGTGCCCTCAGAAAGTC
CAACAGTTTTGAGTGACTACAATTTAACCAAACCTCATGAAGTAGAAAATGTGGACAGTGCAGA
AGCCCCAACCAATGAAGATGAAGATACAGGAGATGATTCGATGAAAGAGAAAGATGAATACAGT
GAAAGAGATGAGAATGTTTTAAAGCCAGAGCCCTTGGGAAATGCAGAAGAGCCTGAAATTCCTT
ACAGCTATGCAAGAGAATATAATGAGTATGAAAATATTAAGCTGGAGAGACATGTTGTCTCATA
TGATAGTGGCAGGCCAACCAGTGGAAAGATGAACTGCGATGTGTGTGGATTATCCTGCATTAGC
TTCAATGTCTTAATGGTTCATAAGAGGAGCCATACTGGTGAACGCCCGTTCCAGTGTAATCAGT
GTGGGGCATCTTTTACTCAGAAAGGTAACCTCCTCCGCCACATTAAACTGCACACGGGGGAAAA
ACCTTTTAAGTGTCACCTCTGCAACTACGCATGCCAAAGAAGAGATGCGCTCACGGGGCATCTT
AGGACCCATTCTGTGGAGAAACCCTACAAATGTGAGTTTTGCGGTAGGAGTTACAAGCAGAGAA
GTTCCCTTGAGGAGCACAAGGAGCGCTGCCGTACATTTCTTCAGAGCTCTGACCTGGGCGACAC
TGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTTCTGGAC
AGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTGGTGAGAAGC
GCCACTGTTTTGATGTCAATTATAATTCCAGCTACATGTATGAGAAGGAGAATGAGATGATACA
GACCCGGATGATGGACCAAGCCATCAACAATGCTATCAGCTATCTTGGGGCTGAAGCCCTGCGC
CCCTTAGTCCAGACACCACCTGCCCCCACCTCTGAGATGGTTCCAGTTATCAGCAGCATGTACC
CCATAGCCCTCACCCGGGCTGAGATGCCTAATGGTGCCCCCCAAGAGTTGGATAAGAAGAACAT
CCACCTGCCAGAGAAGAATCTGCCTTCTGAAAGAGGCCTCTCCCCCAACAATAGTGGCCATGAC
TCTACGGACACTGACAGCAACCACGAAGAACGCCAGAATCACATCTATCAACAAAATCACATGG
TCCTTCCCCGGGCCCGCAGTGGGATGCCACTGCTGAAGGAGGTCCCCCGCTCTTATGAACTCCT
CAAGCCCCCTCCCATCTGCCCAAGAGACTCCATCAAAGTGATCAACAAAGAAGGGGAGGTGATG
GATGTGTTTCGGTGTGACCATTGCCGCGTCCTCTTCCTGGATTATGTGATGTTCACCATTCACA
TGGGTTGCCATGGCTTCCGTGACCCTTTTGAGTGTAACATGTGTGGATATCGAAGCCATGATCG
ATATGAGTTCTCGTCTCATATAGCGAGAGGAGAACACAGAGCCATGTTGAAATGAACATCAGTA
CAGAGATTGCGCTAAGGATTCAATCTCATTTTTAAAAACTGATAACCCTACTCTAACAGGTTGT
TCTCAGATCCACACTCCTTTCCACACCATTTTTAGTAGGGTCAAGTTTCACATGGATAGTCAGA
GAAACCCTGTCTTCATTCAGACATTGTCTGCAAATCTTCTTTTTACTTTTGTGAAACCTTTGTT
TTACCATCAGTTGAATTTTAAGGAATTTAAAAGCCAAAGAAGTATTTTGTCATCATATTTTGCA
GCAATAGAACAGGCCATCCGTTGAAGTCTGTTTCCCGGTCAGAACAGTCCCTCAGTTGTGCTGC
AATAGATTTTTTCTGAGATATATCAGTC

hide sequence

RefSeq Acc Id:

XM_005321790 ⟹ XP_005321847

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,049,411 - 22,135,363 (+)	NCBI
SpeTri2.0	NW_004936490	14,939,693 - 15,025,728 (-)	NCBI

Sequence:

show sequence

GCACGTGGAGCAGCCGGGCAGCCAGAGTGGCTGCTCCAGACCCGCGGAGCCCGGCGGCGACATG
GAAGATATACAATCAAATGTGGAACTGAAAAGCACTCAGGAGCAGCCTGTGCCCTCAGAAAGTC
CAACAGTTTTGAGTGACTACAATTTAACCAAACCTCATGAAGTAGAAAATGTGGACAGTGCAGA
AGCCCCAACCAATGAAGATGAAGATACAGGAGGTGAACGCCCGTTCCAGTGTAATCAGTGTGGG
GCATCTTTTACTCAGAAAGGTAACCTCCTCCGCCACATTAAACTGCACACGGGGGAAAAACCTT
TTAAGTGTCACCTCTGCAACTACGCATGCCAAAGAAGAGATGCGCTCACGGGGCATCTTAGGAC
CCATTCTGTGGAGAAACCCTACAAATGTGAGTTTTGCGGTAGGAGTTACAAGCAGAGAAGTTCC
CTTGAGGAGCACAAGGAGCGCTGCCGTACATTTCTTCAGAGCTCTGACCTGGGCGACACTGCAA
GTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTTCTGGACAGATT
AGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTGGTGAGAAGCGCCAC
TGTTTTGATGTCAATTATAATTCCAGCTACATGTATGAGAAGGAGAATGAGATGATACAGACCC
GGATGATGGACCAAGCCATCAACAATGCTATCAGCTATCTTGGGGCTGAAGCCCTGCGCCCCTT
AGTCCAGACACCACCTGCCCCCACCTCTGAGATGGTTCCAGTTATCAGCAGCATGTACCCCATA
GCCCTCACCCGGGCTGAGATGCCTAATGGTGCCCCCCAAGAGTTGGATAAGAAGAACATCCACC
TGCCAGAGAAGAATCTGCCTTCTGAAAGAGGCCTCTCCCCCAACAATAGTGGCCATGACTCTAC
GGACACTGACAGCAACCACGAAGAACGCCAGAATCACATCTATCAACAAAATCACATGGTCCTT
CCCCGGGCCCGCAGTGGGATGCCACTGCTGAAGGAGGTCCCCCGCTCTTATGAACTCCTCAAGC
CCCCTCCCATCTGCCCAAGAGACTCCATCAAAGTGATCAACAAAGAAGGGGAGGTGATGGATGT
GTTTCGGTGTGACCATTGCCGCGTCCTCTTCCTGGATTATGTGATGTTCACCATTCACATGGGT
TGCCATGGCTTCCGTGACCCTTTTGAGTGTAACATGTGTGGATATCGAAGCCATGATCGATATG
AGTTCTCGTCTCATATAGCGAGAGGAGAACACAGAGCCATGTTGAAATGAACATCAGTACAGAG
ATTGCGCTAAGGATTCAATCTCATTTTTAAAAACTGATAACCCTACTCTAACAGGTTGTTCTCA
GATCCACACTCCTTTCCACACCATTTTTAGTAGGGTCAAGTTTCACATGGATAGTCAGAGAAAC
CCTGTCTTCATTCAGACATTGTCTGCAAATCTTCTTTTTACTTTTGTGAAACCTTTGTTTTACC
ATCAGTTGAATTTTAAGGAATTTAAAAGCCAAAGAAGTATTTTGTCATCATATTTTGCAGCAAT
AGAACAGGCCATCCGTTGAAGTCTGTTTCCCGGTCAGAACAGTCCCTCAGTTGTGCTGCAATAG
ATTTTTTCTGAGATATATCAGTC

hide sequence

RefSeq Acc Id:

XM_005321793 ⟹ XP_005321850

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,049,411 - 22,135,363 (+)	NCBI
SpeTri2.0	NW_004936490	14,939,693 - 15,025,728 (-)	NCBI

Sequence:

show sequence

GCACGTGGAGCAGCCGGGCAGCCAGAGTGGCTGCTCCAGACCCGCGGAGCCCGGCGGCGACATG
GAAGATATACAATCAAATGTGGAACTGAAAAGCACTCAGGAGCAGCCTGTGCCCTCAGAAAGTC
CAACAGTTTTGAGTGACTACAATTTAACCAAACCTCATGAAGTAGAAAATGTGGACAGTGCAGA
AGCCCCAACCAATGAAGATGAAGATACAGGAGTGGAGAAACCCTACAAATGTGAGTTTTGCGGT
AGGAGTTACAAGCAGAGAAGTTCCCTTGAGGAGCACAAGGAGCGCTGCCGTACATTTCTTCAGA
GCTCTGACCTGGGCGACACTGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGA
AAGAGCTCTCGTTCTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAG
AAATTCATTGGTGAGAAGCGCCACTGTTTTGATGTCAATTATAATTCCAGCTACATGTATGAGA
AGGAGAATGAGATGATACAGACCCGGATGATGGACCAAGCCATCAACAATGCTATCAGCTATCT
TGGGGCTGAAGCCCTGCGCCCCTTAGTCCAGACACCACCTGCCCCCACCTCTGAGATGGTTCCA
GTTATCAGCAGCATGTACCCCATAGCCCTCACCCGGGCTGAGATGCCTAATGGTGCCCCCCAAG
AGTTGGATAAGAAGAACATCCACCTGCCAGAGAAGAATCTGCCTTCTGAAAGAGGCCTCTCCCC
CAACAATAGTGGCCATGACTCTACGGACACTGACAGCAACCACGAAGAACGCCAGAATCACATC
TATCAACAAAATCACATGGTCCTTCCCCGGGCCCGCAGTGGGATGCCACTGCTGAAGGAGGTCC
CCCGCTCTTATGAACTCCTCAAGCCCCCTCCCATCTGCCCAAGAGACTCCATCAAAGTGATCAA
CAAAGAAGGGGAGGTGATGGATGTGTTTCGGTGTGACCATTGCCGCGTCCTCTTCCTGGATTAT
GTGATGTTCACCATTCACATGGGTTGCCATGGCTTCCGTGACCCTTTTGAGTGTAACATGTGTG
GATATCGAAGCCATGATCGATATGAGTTCTCGTCTCATATAGCGAGAGGAGAACACAGAGCCAT
GTTGAAATGAACATCAGTACAGAGATTGCGCTAAGGATTCAATCTCATTTTTAAAAACTGATAA
CCCTACTCTAACAGGTTGTTCTCAGATCCACACTCCTTTCCACACCATTTTTAGTAGGGTCAAG
TTTCACATGGATAGTCAGAGAAACCCTGTCTTCATTCAGACATTGTCTGCAAATCTTCTTTTTA
CTTTTGTGAAACCTTTGTTTTACCATCAGTTGAATTTTAAGGAATTTAAAAGCCAAAGAAGTAT
TTTGTCATCATATTTTGCAGCAATAGAACAGGCCATCCGTTGAAGTCTGTTTCCCGGTCAGAAC
AGTCCCTCAGTTGTGCTGCAATAGATTTTTTCTGAGATATATCAGTC

hide sequence

RefSeq Acc Id:

XM_013356990 ⟹ XP_013212444

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	22,122,381 - 22,136,659 (+)	NCBI
SpeTri2.0	NW_004936490	14,939,693 - 14,952,758 (-)	NCBI

Sequence:

show sequence

TTTTCAAAAGTGCTGTTAACATAAACAGAGCAGTAAATCTGGGGCACCATTTTTTTTTCAAAGT
TGTTAAGAAGAATTATATCAGTGTGCAGGTGTCACACGCAGTTACTCAGAATCAGAAAGAAGAC
TGATGGGGGTTAGAAGATCTCCATCTATCTTTTTGTAACCAACCACGTCCAGGCTGTTTCTTCA
ATACTTCCTCTTGCTAATGAAGGTACTGGTTGGGGATGGGTAGGGCTTTCCCATCTCAGCATAA
GACTGCAAAATTTGAATGTGCCCTGGTGGCGGCCTCACTGACCACGCCAAGTACCCCCGGCAGA
AATCTGAGCAGTAATAACAGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAA
AGAGCTCTCGTTCTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGA
AATTCATTGGTGAGAAGCGCCACTGTTTTGATGTCAATTATAATTCCAGCTACATGTATGAGAA
GGAGAATGAGATGATACAGACCCGGATGATGGACCAAGCCATCAACAATGCTATCAGCTATCTT
GGGGCTGAAGCCCTGCGCCCCTTAGTCCAGACACCACCTGCCCCCACCTCTGAGATGGTTCCAG
TTATCAGCAGCATGTACCCCATAGCCCTCACCCGGGCTGAGATGCCTAATGGTGCCCCCCAAGA
GTTGGATAAGAAGAACATCCACCTGCCAGAGAAGAATCTGCCTTCTGAAAGAGGCCTCTCCCCC
AACAATAGTGGCCATGACTCTACGGACACTGACAGCAACCACGAAGAACGCCAGAATCACATCT
ATCAACAAAATCACATGGTCCTTCCCCGGGCCCGCAGTGGGATGCCACTGCTGAAGGAGGTCCC
CCGCTCTTATGAACTCCTCAAGCCCCCTCCCATCTGCCCAAGAGACTCCATCAAAGTGATCAAC
AAAGAAGGGGAGGTGATGGATGTGTTTCGGTGTGACCATTGCCGCGTCCTCTTCCTGGATTATG
TGATGTTCACCATTCACATGGGTTGCCATGGCTTCCGTGACCCTTTTGAGTGTAACATGTGTGG
ATATCGAAGCCATGATCGATATGAGTTCTCGTCTCATATAGCGAGAGGAGAACACAGAGCCATG
TTGAAATGAACATCAGTACAGAGATTGCGCTAAGGATTCAATCTCATTTTTAAAAACTGATAAC
CCTACTCTAACAGGTTGTTCTCAGATCCACACTCCTTTCCACACCATTTTTAGTAGGGTCAAGT
TTCACATGGATAGTCAGAGAAACCCTGTCTTCATTCAGACATTGTCTGCAAATCTTCTTTTTAC
TTTTGTGAAACCTTTGTTTTACCATCAGTTGAATTTTAAGGAATTTAAAAGCCAAAGAAGTATT
TTGTCATCATATTTTGCAGCAATAGAACAGGCCATCCGTTGAAGTCTGTTTCCCGGTCAGAACA
GTCCCTCAGTTGTGCTGCAATAGATTTTTTCTGAGATATATCAGTC

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Protein Sequences


Protein RefSeqs	XP_005321845	(Get FASTA)	NCBI Sequence Viewer
	XP_005321847	(Get FASTA)	NCBI Sequence Viewer
	XP_005321850	(Get FASTA)	NCBI Sequence Viewer
	XP_013212444	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003405.3
GenBank Protein	KAG3269061	(Get FASTA)	NCBI Sequence Viewer
	KAG3269062	(Get FASTA)	NCBI Sequence Viewer
	KAG3269063	(Get FASTA)	NCBI Sequence Viewer
	KAG3269064	(Get FASTA)	NCBI Sequence Viewer
	KAG3269065	(Get FASTA)	NCBI Sequence Viewer
	KAG3269066	(Get FASTA)	NCBI Sequence Viewer
	KAG3269067	(Get FASTA)	NCBI Sequence Viewer
	KAG3269068	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005321850 ⟸ XM_005321793

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEDIQSNVELKSTQEQPVPSESPTVLSDYNLTKPHEVENVDSAEAPTNEDEDTGVEKPYKCEFC
GRSYKQRSSLEEHKERCRTFLQSSDLGDTASAEARHIKAEMGSERALVLDRLASNVAKRKSSMP
QKFIGEKRHCFDVNYNSSYMYEKENEMIQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMV
PVISSMYPIALTRAEMPNGAPQELDKKNIHLPEKNLPSERGLSPNNSGHDSTDTDSNHEERQNH
IYQQNHMVLPRARSGMPLLKEVPRSYELLKPPPICPRDSIKVINKEGEVMDVFRCDHCRVLFLD
YVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRAMLK

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RefSeq Acc Id:

XP_005321847 ⟸ XM_005321790

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEDIQSNVELKSTQEQPVPSESPTVLSDYNLTKPHEVENVDSAEAPTNEDEDTGGERPFQCNQC
GASFTQKGNLLRHIKLHTGEKPFKCHLCNYACQRRDALTGHLRTHSVEKPYKCEFCGRSYKQRS
SLEEHKERCRTFLQSSDLGDTASAEARHIKAEMGSERALVLDRLASNVAKRKSSMPQKFIGEKR
HCFDVNYNSSYMYEKENEMIQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMVPVISSMYP
IALTRAEMPNGAPQELDKKNIHLPEKNLPSERGLSPNNSGHDSTDTDSNHEERQNHIYQQNHMV
LPRARSGMPLLKEVPRSYELLKPPPICPRDSIKVINKEGEVMDVFRCDHCRVLFLDYVMFTIHM
GCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRAMLK

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RefSeq Acc Id:	XP_005321845 ⟸ XM_005321788
- Peptide Label:	isoform X1
- UniProtKB:	I3M305 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDIQSNVELKSTQEQPVPSESPTVLSDYNLTKPHEVENVDSAEAPTNEDEDTGDDSMKEKDEY SERDENVLKPEPLGNAEEPEIPYSYAREYNEYENIKLERHVVSYDSGRPTSGKMNCDVCGLSCI SFNVLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCNYACQRRDALTGH LRTHSVEKPYKCEFCGRSYKQRSSLEEHKERCRTFLQSSDLGDTASAEARHIKAEMGSERALVL DRLASNVAKRKSSMPQKFIGEKRHCFDVNYNSSYMYEKENEMIQTRMMDQAINNAISYLGAEAL RPLVQTPPAPTSEMVPVISSMYPIALTRAEMPNGAPQELDKKNIHLPEKNLPSERGLSPNNSGH DSTDTDSNHEERQNHIYQQNHMVLPRARSGMPLLKEVPRSYELLKPPPICPRDSIKVINKEGEV MDVFRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRAMLK hide sequence

RefSeq Acc Id:

XP_013212444 ⟸ XM_013356990

- Peptide Label:

isoform X4

- Sequence:

show sequence

MGSERALVLDRLASNVAKRKSSMPQKFIGEKRHCFDVNYNSSYMYEKENEMIQTRMMDQAINNA
ISYLGAEALRPLVQTPPAPTSEMVPVISSMYPIALTRAEMPNGAPQELDKKNIHLPEKNLPSER
GLSPNNSGHDSTDTDSNHEERQNHIYQQNHMVLPRARSGMPLLKEVPRSYELLKPPPICPRDSI
KVINKEGEVMDVFRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGE
HRAMLK

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RefSeq Acc Id:

ENSSTOP00000003405 ⟸ ENSSTOT00000003799

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003804	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003799.3	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Ikzf3	ENTREZGENE
PANTHER	RIKEN CDNA 3300002I08 GENE-RELATED	UniProtKB/TrEMBL
	ZNF44 PROTEIN	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	I3M305	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)