Mta3 (metastasis associated 1 family member 3) - Rat Genome Database

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Gene: Mta3 (metastasis associated 1 family member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Mta3
Name: metastasis associated 1 family member 3
RGD ID: 12710772
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone deacetylase binding (inferred); metal ion binding (inferred); INVOLVED IN cell population proliferation (ortholog); G2/M transition of mitotic cell cycle (ortholog); granulosa cell proliferation (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); Lynch syndrome (ortholog); FOUND IN cytoplasm (inferred); intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: metastasis associated 1 family member 3, transcript variant X1; metastasis associated 1 family member 3, transcript variant X2; metastasis associated 1 family member 3, transcript variant X4; metastasis-associated protein MTA3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,563,695 - 37,705,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365088,989,681 - 9,132,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365088,989,695 - 9,132,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mta3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,563,695 - 37,705,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365088,989,681 - 9,132,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365088,989,695 - 9,132,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38242,494,110 - 42,756,946 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl242,494,569 - 42,756,947 (+)EnsemblGRCh38hg38GRCh38
GRCh37242,721,250 - 42,984,086 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,649,175 - 42,789,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 34242,707,321 - 42,848,003NCBI
Celera242,636,184 - 42,775,597 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef242,530,841 - 42,670,522 (+)NCBIHuRef
CHM1_1242,725,097 - 42,865,672 (+)NCBICHM1_1
T2T-CHM13v2.0242,499,549 - 42,762,201 (+)NCBIT2T-CHM13v2.0
Mta3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391784,013,483 - 84,131,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1784,013,592 - 84,128,945 (+)EnsemblGRCm39 Ensembl
GRCm381783,706,163 - 83,823,715 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,706,163 - 83,821,516 (+)EnsemblGRCm38mm10GRCm38
MGSCv371784,105,503 - 84,214,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361783,614,535 - 83,723,228 (+)NCBIMGSCv36mm8
Celera1788,058,623 - 88,169,758 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1754.53NCBI
Mta3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,619,575 - 16,739,732 (-)NCBIGRCr8
mRatBN7.2610,867,028 - 10,987,221 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,867,011 - 10,986,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx611,170,306 - 11,281,199 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,479,638 - 11,590,535 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,992,528 - 11,103,617 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.066,904,449 - 7,036,929 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,908,684 - 7,031,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.066,858,988 - 6,986,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,060,212 - 7,180,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.167,060,211 - 7,158,087 (+)NCBI
Celera610,573,980 - 10,694,134 (-)NCBICelera
Cytogenetic Map6q12NCBI
Mta3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,965,500 - 10,108,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBIChiLan1.0ChiLan1.0
MTA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21283,623,675 - 83,913,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A83,638,109 - 83,917,640 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A42,593,721 - 42,847,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A43,444,119 - 43,694,314 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A43,513,514 - 43,694,314 (+)Ensemblpanpan1.1panPan2
MTA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,288,796 - 34,301,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1733,899,194 - 34,072,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01734,897,656 - 35,043,556 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11734,022,785 - 34,196,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,038,500 - 34,258,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,302,876 - 34,476,917 (+)NCBIUU_Cfam_GSD_1.0
MTA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl397,601,412 - 97,782,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1397,601,403 - 97,782,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23103,872,735 - 103,917,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,495,903 - 64,755,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1464,500,593 - 64,684,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604547,152,448 - 47,411,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mta3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473824,247,752 - 24,403,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000012982   ⟹   ENSSTOP00000011632
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365088,994,090 - 9,132,722 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000039783   ⟹   ENSSTOP00000031175
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365088,989,681 - 9,132,722 (-)Ensembl
RefSeq Acc Id: XM_040271053   ⟹   XP_040126987
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629237,563,695 - 37,703,723 (-)NCBI
RefSeq Acc Id: XM_040271054   ⟹   XP_040126988
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629237,563,695 - 37,703,723 (-)NCBI
RefSeq Acc Id: XM_040271055   ⟹   XP_040126989
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629237,563,695 - 37,705,245 (-)NCBI
RefSeq Acc Id: XR_005727282
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629237,563,695 - 37,703,723 (-)NCBI
RefSeq Acc Id: XP_040126989   ⟸   XM_040271055
- Peptide Label: isoform X3
- UniProtKB: I3MK50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126988   ⟸   XM_040271054
- Peptide Label: isoform X2
- UniProtKB: A0A287DC74 (UniProtKB/TrEMBL),   I3MK50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126987   ⟸   XM_040271053
- Peptide Label: isoform X1
- UniProtKB: I3MK50 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000031175   ⟸   ENSSTOT00000039783
RefSeq Acc Id: ENSSTOP00000011632   ⟸   ENSSTOT00000012982
Protein Domains
BAH   ELM2   SANT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012978 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012982.3 UniProtKB/TrEMBL
  ENSSTOT00000039783.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.490 UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  MIER/MTA UniProtKB/TrEMBL
  MTA1_R1 UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
NCBI Gene Mta3 ENTREZGENE
PANTHER METASTASIS-ASSOCIATED PROTEIN MTA3 UniProtKB/TrEMBL
  PTHR10865 UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  GATA UniProtKB/TrEMBL
  MTA_R1 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PROSITE BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZnF_GATA UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287DC74 ENTREZGENE, UniProtKB/TrEMBL
  I3MK50 ENTREZGENE, UniProtKB/TrEMBL