Cryl1 (crystallin lambda 1) - Rat Genome Database

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Gene: Cryl1 (crystallin lambda 1) Ictidomys tridecemlineatus
Analyze
Symbol: Cryl1
Name: crystallin lambda 1
RGD ID: 12710219
Description: ENCODES a protein that exhibits L-gulonate 3-dehydrogenase activity (inferred); NAD+ binding (inferred); oxidoreductase activity (inferred); INVOLVED IN fatty acid metabolic process (inferred); glucuronate catabolic process to xylulose 5-phosphate (inferred); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 3B (ortholog); autosomal recessive nonsyndromic deafness 1A (ortholog); autosomal recessive nonsyndromic deafness 1B (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lambda-crystallin homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945119,654,108 - 119,786,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,201,697 - 1,334,527 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367201,201,725 - 1,334,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)

References

Genomics

Comparative Map Data
Cryl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945119,654,108 - 119,786,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,201,697 - 1,334,527 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367201,201,725 - 1,334,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381320,403,669 - 20,525,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1320,403,666 - 20,525,873 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,977,808 - 21,099,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,875,806 - 19,998,012 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,875,812 - 19,997,943NCBI
Celera132,039,633 - 2,161,963 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,781,253 - 1,903,750 (-)NCBIHuRef
CHM1_11320,946,082 - 21,068,258 (-)NCBICHM1_1
T2T-CHM13v2.01319,596,766 - 19,719,067 (-)NCBIT2T-CHM13v2.0
Cryl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,512,491 - 57,635,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,512,450 - 57,635,986 (-)EnsemblGRCm39 Ensembl
GRCm381457,275,034 - 57,398,483 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,274,993 - 57,398,529 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,893,871 - 58,017,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361456,229,144 - 56,352,593 (-)NCBIMGSCv36mm8
Celera1455,069,601 - 55,193,438 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1430.1NCBI
Cryl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21531,427,011 - 31,545,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,427,054 - 31,545,997 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,418,360 - 33,537,311 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01534,569,025 - 34,687,978 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01532,827,144 - 32,946,073 (-)NCBIRnor_WKY
Rnor_6.01537,543,727 - 37,663,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,543,727 - 37,663,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,389,673 - 41,509,443 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,320,075 - 36,440,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,335,774 - 36,456,279 (-)NCBI
Celera1531,137,966 - 31,257,153 (-)NCBICelera
Cytogenetic Map15p12NCBI
Cryl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554971,182,115 - 1,292,721 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554971,183,707 - 1,316,720 (-)NCBIChiLan1.0ChiLan1.0
CRYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11320,043,630 - 20,165,344 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1320,043,630 - 20,165,344 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0131,729,724 - 1,852,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CRYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12517,551,586 - 17,733,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2517,562,926 - 17,733,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2517,619,089 - 17,764,441 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02517,726,192 - 17,871,609 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2517,700,683 - 17,871,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12517,597,124 - 17,742,462 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02517,608,651 - 17,753,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02517,665,268 - 17,810,580 (+)NCBIUU_Cfam_GSD_1.0
CRYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11845,475 - 931,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111845,471 - 925,849 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,725 - 138,292 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.13567,937 - 704,109 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl3567,931 - 688,388 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,881,123 - 44,023,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cryl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,127,002 - 17,312,348 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,127,362 - 17,312,271 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000004478   ⟹   ENSSTOP00000004018
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367201,201,697 - 1,334,527 (+)Ensembl
RefSeq Acc Id: XM_005338618   ⟹   XP_005338675
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945119,654,108 - 119,786,851 (+)NCBI
SpeTri2.0NW_0049367201,201,725 - 1,334,483 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338675 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3292820 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338675   ⟸   XM_005338618
- UniProtKB: I3M4B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004018   ⟸   ENSSTOT00000004478
Protein Domains
3HCDH   3HCDH_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004469 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000004018 ENTREZGENE
  ENSSTOP00000004018.3 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004478.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1040.10 UniProtKB/TrEMBL
InterPro 3-OHacyl-CoA_DH UniProtKB/TrEMBL
  3-OHacyl-CoA_DH_CS UniProtKB/TrEMBL
  3-OHacyl-CoA_DH_NAD-bd UniProtKB/TrEMBL
  3HC_DH_C UniProtKB/TrEMBL
  6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  6PGD_dom2 UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Cryl1 ENTREZGENE
Pfam 3HCDH UniProtKB/TrEMBL
  3HCDH_N UniProtKB/TrEMBL
PIRSF HCDH UniProtKB/TrEMBL
PROSITE 3HCDH UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt I3M4B6 ENTREZGENE, UniProtKB/TrEMBL