Sqor (sulfide quinone oxidoreductase) - Rat Genome Database

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Gene: Sqor (sulfide quinone oxidoreductase) Ictidomys tridecemlineatus
Analyze
Symbol: Sqor
Name: sulfide quinone oxidoreductase
RGD ID: 12707852
Description: ENCODES a protein that exhibits FAD binding (inferred); glutathione-dependent sulfide quinone oxidoreductase activity (inferred); oxidoreductase activity (inferred); INVOLVED IN sulfide oxidation, using sulfide:quinone oxidoreductase (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Sqrdl; sulfide quinone oxidoreductase, transcript variant X1; sulfide quinone oxidoreductase, transcript variant X2; sulfide quinone reductase-like; sulfide quinone reductase-like (yeast); sulfide:quinone oxidoreductase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864090,400,129 - 90,448,325 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364718,248,172 - 8,296,383 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364718,248,195 - 8,296,369 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sqor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864090,400,129 - 90,448,325 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364718,248,172 - 8,296,383 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364718,248,195 - 8,296,369 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SQOR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,631,148 - 45,691,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1545,631,148 - 45,691,281 (+)EnsemblGRCh38hg38GRCh38
GRCh371545,923,346 - 45,983,479 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361543,714,548 - 43,770,771 (+)NCBINCBI36Build 36hg18NCBI36
Build 341543,714,547 - 43,770,770NCBI
Celera1522,818,429 - 22,874,655 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1522,745,909 - 22,806,168 (+)NCBIHuRef
CHM1_11546,041,503 - 46,101,610 (+)NCBICHM1_1
T2T-CHM13v2.01543,439,309 - 43,499,454 (+)NCBIT2T-CHM13v2.0
Sqor
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,607,249 - 122,651,473 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,607,157 - 122,651,489 (+)EnsemblGRCm39 Ensembl
GRCm382122,765,327 - 122,809,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,765,237 - 122,809,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,591,095 - 122,635,289 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362122,473,440 - 122,500,994 (+)NCBIMGSCv36mm8
Celera2123,961,497 - 124,004,658 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.67NCBI
Sqor
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83130,294,783 - 130,341,655 (+)NCBIGRCr8
mRatBN7.23109,841,225 - 109,886,724 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3109,841,250 - 109,960,778 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3113,742,553 - 113,783,815 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03122,338,087 - 122,379,345 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03119,998,460 - 120,039,731 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03114,894,944 - 114,939,375 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3114,900,343 - 114,939,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03121,433,075 - 121,477,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,743,347 - 109,752,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3108,724,668 - 108,764,086 (+)NCBICelera
Cytogenetic Map3q35NCBI
Sqor
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554097,831,636 - 7,877,562 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554097,831,698 - 7,857,249 (-)NCBIChiLan1.0ChiLan1.0
SQOR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21634,868,713 - 34,929,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11539,045,421 - 39,106,342 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01524,575,863 - 24,636,798 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11542,905,604 - 42,965,538 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1542,908,532 - 42,965,538 (+)Ensemblpanpan1.1panPan2
SQOR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,956,335 - 12,004,770 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,956,366 - 12,004,765 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,946,492 - 11,994,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03012,093,105 - 12,141,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,948,076 - 12,141,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13012,014,483 - 12,062,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03012,120,430 - 12,168,835 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03012,240,771 - 12,289,177 (+)NCBIUU_Cfam_GSD_1.0
SQOR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,076,161 - 126,137,062 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,078,335 - 126,137,407 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21140,423,110 - 140,435,921 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SQOR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12637,533,807 - 37,588,749 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2637,533,749 - 37,567,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048103,469,002 - 103,551,221 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sqor
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473113,708,866 - 13,778,415 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473113,709,278 - 13,758,630 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000005093   ⟹   ENSSTOP00000004571
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364718,248,172 - 8,296,383 (+)Ensembl
RefSeq Acc Id: XM_005316530   ⟹   XP_005316587
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864090,400,129 - 90,448,325 (+)NCBI
SpeTri2.0NW_0049364718,248,195 - 8,296,369 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726557   ⟹   XP_021582232
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864090,417,254 - 90,448,325 (+)NCBI
SpeTri2.0NW_0049364718,265,349 - 8,296,369 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040275104   ⟹   XP_040131038
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864090,410,886 - 90,448,325 (+)NCBI
RefSeq Acc Id: XM_040275105   ⟹   XP_040131039
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864090,417,253 - 90,448,325 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005316587 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582232 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131038 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131039 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004571.3
GenBank Protein KAG3261819 (Get FASTA)   NCBI Sequence Viewer  
  KAG3261820 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316587   ⟸   XM_005316530
- UniProtKB: I3M5G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582232   ⟸   XM_021726557
- UniProtKB: I3M5G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131038   ⟸   XM_040275104
- UniProtKB: I3M5G6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131039   ⟸   XM_040275105
- UniProtKB: I3M5G6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000004571   ⟸   ENSSTOT00000005093
Protein Domains
FAD/NAD(P)-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005093 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005093.3 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
InterPro FAD/NAD-bd_sf UniProtKB/TrEMBL
  FAD/NAD-binding_dom UniProtKB/TrEMBL
  Sulphide_quinone_reductase UniProtKB/TrEMBL
NCBI Gene Sqrdl ENTREZGENE
PANTHER PTHR10632 UniProtKB/TrEMBL
  SULFIDE:QUINONE OXIDOREDUCTASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Pyr_redox_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
UniProt I3M5G6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Sqor  sulfide quinone oxidoreductase  Sqrdl  sulfide quinone reductase-like (yeast)  Symbol and/or name change 5135510 APPROVED