Itk (IL2 inducible T cell kinase) - Rat Genome Database

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Gene: Itk (IL2 inducible T cell kinase) Ictidomys tridecemlineatus
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Symbol: Itk
Name: IL2 inducible T cell kinase
RGD ID: 12707162
Description: ENCODES a protein that exhibits ATP binding (inferred); kinase activity (inferred); metal ion binding (inferred); INVOLVED IN NK T cell differentiation (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); genetic disease (ortholog); lymphoproliferative syndrome (ortholog); FOUND IN cell-cell junction (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IL2 inducible T-cell kinase; IL2 inducible T-cell kinase, transcript variant X1; IL2 inducible T-cell kinase, transcript variant X2; tyrosine-protein kinase ITK/TSK
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,441,822 - 107,503,029 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365155,891,828 - 5,952,458 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365155,891,873 - 5,952,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Itk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,441,822 - 107,503,029 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365155,891,828 - 5,952,458 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365155,891,873 - 5,952,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385157,180,840 - 157,255,185 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5157,142,933 - 157,255,185 (+)EnsemblGRCh38hg38GRCh38
GRCh375156,607,851 - 156,682,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365156,540,485 - 156,614,687 (+)NCBINCBI36Build 36hg18NCBI36
Build 345156,540,484 - 156,614,687NCBI
Celera5152,634,440 - 152,708,658 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5151,695,940 - 151,769,767 (+)NCBIHuRef
CHM1_15156,040,619 - 156,114,765 (+)NCBICHM1_1
T2T-CHM13v2.05157,699,782 - 157,774,113 (+)NCBIT2T-CHM13v2.0
Itk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,215,975 - 46,280,342 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1146,215,977 - 46,280,342 (-)EnsemblGRCm39 Ensembl
GRCm381146,325,148 - 46,389,515 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,325,150 - 46,389,515 (-)EnsemblGRCm38mm10GRCm38
MGSCv371146,138,652 - 46,203,017 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361146,168,576 - 46,232,923 (-)NCBIMGSCv36mm8
Celera1150,911,124 - 50,975,428 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1127.75NCBI
Itk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81031,254,667 - 31,316,004 (-)NCBIGRCr8
mRatBN7.21030,753,344 - 30,814,685 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1030,753,344 - 30,814,685 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1035,480,495 - 35,541,820 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0104,018,954 - 4,080,268 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01030,455,134 - 30,516,447 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01031,431,820 - 31,493,413 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1031,431,809 - 31,493,419 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01031,248,181 - 31,308,814 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,455,982 - 31,518,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11031,457,025 - 31,519,124 (-)NCBI
Celera1030,205,244 - 30,266,599 (-)NCBICelera
Cytogenetic Map10q21NCBI
Itk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,387,589 - 11,448,199 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,387,595 - 11,447,896 (+)NCBIChiLan1.0ChiLan1.0
ITK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24152,364,876 - 152,450,621 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15150,504,423 - 150,590,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05152,582,125 - 152,656,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15159,204,016 - 159,277,689 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5159,204,016 - 159,277,689 (+)Ensemblpanpan1.1panPan2
ITK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,902,886 - 52,966,465 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl452,902,871 - 52,966,542 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,795,128 - 52,858,373 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0453,339,439 - 53,402,778 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl453,340,020 - 53,402,842 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1453,165,818 - 53,229,419 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0453,272,737 - 53,336,070 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0453,789,682 - 53,852,963 (-)NCBIUU_Cfam_GSD_1.0
ITK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1666,010,772 - 66,082,185 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11666,010,766 - 66,082,263 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,884,821 - 71,940,522 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ITK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12359,575,113 - 59,650,166 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2359,575,179 - 59,650,559 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603417,980,495 - 18,055,594 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473332,127,388 - 32,198,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473332,125,005 - 32,198,901 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000009225   ⟹   ENSSTOP00000008275
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365155,891,828 - 5,952,458 (-)Ensembl
RefSeq Acc Id: XM_005325447   ⟹   XP_005325504
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,441,822 - 107,503,029 (-)NCBI
SpeTri2.0NW_0049365155,891,873 - 5,952,400 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325504 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008275.2
GenBank Protein KAG3265392 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265393 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325504   ⟸   XM_005325447
- UniProtKB: I3MD63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000008275   ⟸   ENSSTOT00000009225
Protein Domains
PH   Protein kinase   SH2   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009223 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009225.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro ITK_PTKc UniProtKB/TrEMBL
  ITK_SH3 UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Znf_Btk_motif UniProtKB/TrEMBL
NCBI Gene Itk ENTREZGENE
PANTHER TYROSINE-PROTEIN KINASE UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE ITK/TSK UniProtKB/TrEMBL
Pfam BTK UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/TrEMBL
  TECBTKDOMAIN UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  ZF_BTK UniProtKB/TrEMBL
SMART BTK UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt I3MD63 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 Itk  IL2 inducible T cell kinase    IL2 inducible T-cell kinase  Symbol and/or name change 5135510 APPROVED