Katnbl1 (katanin regulatory subunit B1 like 1)

Gene: Katnbl1 (katanin regulatory subunit B1 like 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Katnbl1

Name:

katanin regulatory subunit B1 like 1

RGD ID:

12707027

Description:

ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN cytoplasmic microtubule organization (inferred); positive regulation of cytoskeleton organization (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN katanin complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

katanin regulatory subunit B1 like 1, transcript variant X1; katanin regulatory subunit B1 like 1, transcript variant X2; KATNB1-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	79,438,171 - 79,473,877 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936673	2,675,095 - 2,713,660 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936673	2,677,847 - 2,713,645 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoplasmic microtubule organization (IEA)

positive regulation of cytoskeleton organization (IEA)

Cellular Component

cleavage furrow (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

katanin complex (IEA,ISO)

midbody (IEA)

mitotic spindle (IEA)

mitotic spindle pole (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

microtubule binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Katnbl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	79,438,171 - 79,473,877 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936673	2,675,095 - 2,713,660 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936673	2,677,847 - 2,713,645 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KATNBL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	34,140,674 - 34,210,096 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	34,140,674 - 34,210,096 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	34,432,875 - 34,502,297 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	32,220,167 - 32,289,515 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	32,220,167 - 32,289,515	NCBI
Celera	15	11,235,435 - 11,304,861 (-)	NCBI		Celera
Cytogenetic Map	15	q14	NCBI
HuRef	15	11,296,423 - 11,365,736 (-)	NCBI		HuRef
CHM1_1	15	34,550,842 - 34,620,311 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	31,938,913 - 32,008,344 (-)	NCBI		T2T-CHM13v2.0

Katnbl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	112,209,556 - 112,244,582 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	112,209,556 - 112,244,585 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	112,379,211 - 112,414,237 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	112,379,211 - 112,414,240 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	112,219,368 - 112,254,394 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	112,180,050 - 112,215,076 (+)	NCBI		MGSCv36	mm8
Celera	2	113,530,244 - 113,565,292 (+)	NCBI		Celera
Cytogenetic Map	2	E3	NCBI
cM Map	2	57.02	NCBI

Katnbl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	119,638,068 - 119,680,179 (+)	NCBI		GRCr8
mRatBN7.2	3	99,183,748 - 99,225,789 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	99,183,716 - 99,225,786 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	102,811,906 - 102,852,657 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	111,410,905 - 111,451,653 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	109,106,197 - 109,148,234 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	103,511,653 - 103,513,498 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	103,866,144 - 103,905,936 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	110,459,990 - 110,501,586 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	98,225,734 - 98,267,760 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	98,169,227 - 98,211,251 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Katnbl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	404,548 - 432,806 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	391,335 - 432,806 (+)	NCBI	ChiLan1.0	ChiLan1.0

KATNBL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	22,923,191 - 22,992,742 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	27,644,937 - 27,714,506 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	12,650,139 - 12,719,655 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	31,484,885 - 31,554,408 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	31,484,885 - 31,554,402 (-)	Ensembl	panpan1.1		panPan2

KATNBL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	865,276 - 924,874 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	910,613 - 923,890 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	909,701 - 969,336 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	961,409 - 1,022,576 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	961,381 - 1,027,851 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	909,659 - 969,293 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	1,008,669 - 1,068,343 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	1,136,285 - 1,195,924 (+)	NCBI		UU_Cfam_GSD_1.0

KATNBL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	80,288,066 - 80,383,037 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	80,287,989 - 80,383,036 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	86,329,719 - 86,341,955 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KATNBL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	48,693,622 - 48,765,021 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	48,693,671 - 48,763,349 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	92,131,528 - 92,208,884 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Katnbl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	121,264 - 174,826 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005337141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021734460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000003816 ⟹ ENSSTOP00000003420

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936673	2,675,095 - 2,713,660 (-)	Ensembl

RefSeq Acc Id:

XM_005337141 ⟹ XP_005337198

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	79,438,172 - 79,473,877 (+)	NCBI
SpeTri2.0	NW_004936673	2,677,961 - 2,713,645 (-)	NCBI

Sequence:

show sequence

TGCGCGCGCGGCGGCGTTTGAATGGCTCTGAGTGGGGCCCGGCCCTGCAATAGAGGGACGCTTT
AGGCTGTCCCGCGGCAGTTTGCCAGCGCCGGCGCTGGGGTGAGGCGCTGCGGTACCATGAGGCG
CCGGTATTTAAGAGATTATGGCATCTGAAACCCACAATGTTAAAAAACGAAACTTTTCTAATAA
TATTGAGGATCATTCCATTGATCTTCCTAGAAAAAAGATCTCTAATTTCACTAATAAGAACATG
AAGGAGGTTAAGAAATCTCCAAAACAGTTGGCTGCTTATATAAATAGAACAGTTGGCCAAGCTG
TGAAAAGCCCAGATAAACTACGAAAGGTGATCTATCGCAGAAAGAAAGTTCAGCATCCTTTTCC
AAATCCTTGTTACAGAAAAAAACAGTCCCCTATAAGTGGGGGCTGTGACATGGCAAATAAAGAA
AATGAACTGGCTTGTGCAGGCCACCTACCTGAAAAATTACACCATGATAGTCGAACATATTTGG
TTAACTCCAGTGACTCTGGTACTTCACAGACAGAAAGCCCATCATCTAAATACAGTGGGTTTTT
TTCCGAGGTTTCTCAGGATCATGAAACAATGGCCCAAGTTTTGTTTAGCAGGAATTTGAGACTG
AATGTAGCTTTAACTTTCTGGAGAAAGAGAAGTATAAGTGAACTTGTAGCTTATTTGGTGAGGA
TAGAAGATCTTGGAGTTGTGGTAGATTGCCTGCCTGTACTCACTAATAGTTTACAGGAAGAAAA
ACAATATATCTCACTTGGCTGCTGTGTAGACTTATTGCCTCTTGTAAAGTCATTACTTAAAAGC
AAATTTGAAGAATATGTGATAGTTGGTTTAAACTGGCTTCAAGCTGTAATAAAAAGGTGGTGGT
CAGAACTATCATCCAAAACAGAAATTATAAGTGATGGAAATATTCAGATTTTAAAACAACAATT
AAGTGGCTTGTGGGAACAAGAAAACCATCTTACTTTGGTTCCAGGATATACTGGTAATATAGCT
AAGGATGTAGATGCTTATTTATTACAGTTGCATTGAGATATTTCGTCTACTAAAGAGCATTTGG
TTATTCAAAACATCCTGGATTATATGATTTCCAAAAACAAGTCTCTTCTGAGAACTATGAACTG
TGGAAGAAACTGAAACCATTTTTTCTTTTAAAAAGCCACATAATGAAACCACTAATGAAAACCT
AACAATCTACTTCACATTGAAGTGGAAAAATATCCAAACGGAGCAGCTTCAACTTCAATGAGGT
GAAAGTGCACTACAAAGATTGTTCGCCTTTGCTGCATTTGGGATTTATGTGGTTATCTGGTAAC
ATTGTTTAAGAACTACTGGTCTTAATGCAGTCCTGCATAAGAATATAATTTATACTATGTGAAA
AAATAAGGCAGGACTTATTACTAGGAACCACAAAGACCAATCATTATTAATTTTTTATTGTGTT
TTATAAAAAAACACTTGAATGTGTGCAGCTATTTTCTTATGTTGAATAAATTTCAAAGTTTAAA
ACATCATAGTAAATAATCAATATTAAAAATGTTTTCTCCACACTGA

hide sequence

RefSeq Acc Id:

XM_021734460 ⟹ XP_021590135

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	79,438,171 - 79,473,834 (+)	NCBI
SpeTri2.0	NW_004936673	2,677,847 - 2,713,645 (-)	NCBI

Sequence:

show sequence

TGCGCGCGCGGCGGCGTTTGAATGGCTCTGAGTGGGGCCCGGCCCTGCAATAGAGGGACGCTTT
AGGCTGTCCCGCGGCAGTTTGCCAGCGCCGGCGCTGGGGTGAGGCGCTGCGGTACCATGAGGCG
CCGGTATTTAAGAGATTATGGCATCTGAAACCCACAATGTTAAAAAACGAAACTTTTCTAATAA
TATTGAGGATCATTCCATTGATCTTCCTAGAAAAAAGATCTCTAATTTCACTAATAAGAACATG
AAGGAGGTTAAGAAATCTCCAAAACAGTTGGCTGCTTATATAAATAGAACAGTTGGCCAAGCTG
TGAAAAGCCCAGATAAACTACGAAAGGTGATCTATCGCAGAAAGAAAGTTCAGCATCCTTTTCC
AAATCCTTGTTACAGAAAAAAACAGTCCCCTATAAGTGGGGGCTGTGACATGGCAAATAAAGAA
AATGAACTGGCTTGTGCAGGCCACCTACCTGAAAAATTACACCATGATAGTCGAACATATTTGG
TTAACTCCAGTGACTCTGGTACTTCACAGACAGAAAGCCCATCATCTAAATACAGTGGGTTTTT
TTCCGAGGTTTCTCAGGATCATGAAACAATGGCCCAAGTTTTGTTTAGCAGGAATTTGAGACTG
AATGTAGCTTTAACTTTCTGGAGAAAGAGAAGTATAAGTGAACTTGTAGCTTATTTGGTGAGGA
TAGAAGATCTTGGAGTTGTGGTAGATTGCCTGCCTGTACTCACTAATAGTTTACAGGAAGAAAA
ACAATATATCTCACTTGGCTGCTGTGTAGACTTATTGCCTCTTGTAAAGTCATTACTTAAAAGC
AAATTTGAAGAAAATATTCAGATTTTAAAACAACAATTAAGTGGCTTGTGGGAACAAGAAAACC
ATCTTACTTTGGTTCCAGGATATACTGGTAATATAGCTAAGGATGTAGATGCTTATTTATTACA
GTTGCATTGAGATATTTCGTCTACTAAAGAGCATTTGGTTATTCAAAACATCCTGGATTATATG
ATTTCCAAAAACAAGTCTCTTCTGAGAACTATGAACTGTGGAAGAAACTGAAACCATTTTTTCT
TTTAAAAAGCCACATAATGAAACCACTAATGAAAACCTAACAATCTACTTCACATTGAAGTGGA
AAAATATCCAAACGGAGCAGCTTCAACTTCAATGAGGTGAAAGTGCACTACAAAGATTGTTCGC
CTTTGCTGCATTTGGGATTTATGTGGTTATCTGGTAACATTGTTTAAGAACTACTGGTCTTAAT
GCAGTCCTGCATAAGAATATAATTTATACTATGTGAAAAAATAAGGCAGGACTTATTACTAGGA
ACCACAAAGACCAATCATTATTAATTTTTTATTGTGTTTTATAAAAAAACACTTGAATGTGTGC
AGCTATTTTCTTATGTTGAATAAATTTCAAAGTTTAAAACATCATAGTAAATAATCAATATTAA
AAATGTTTTCTCCACACTGAGATACTGTGTATATAAATGCCTTAATTATTAATAAGCCAATGTG
TTATGATACCAATATGTTTTTTAAAAATTAAAAAAAACCCACCAGGCATGGTGGGTACATGCCT
GTAATC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005337198	(Get FASTA)	NCBI Sequence Viewer
	XP_021590135	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003420.2
GenBank Protein	KAG3261555	(Get FASTA)	NCBI Sequence Viewer
	KAG3261556	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005337198 ⟸ XM_005337141
- Peptide Label:	isoform X1
- UniProtKB:	I3M320 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASETHNVKKRNFSNNIEDHSIDLPRKKISNFTNKNMKEVKKSPKQLAAYINRTVGQAVKSPDK LRKVIYRRKKVQHPFPNPCYRKKQSPISGGCDMANKENELACAGHLPEKLHHDSRTYLVNSSDS GTSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGV VVDCLPVLTNSLQEEKQYISLGCCVDLLPLVKSLLKSKFEEYVIVGLNWLQAVIKRWWSELSSK TEIISDGNIQILKQQLSGLWEQENHLTLVPGYTGNIAKDVDAYLLQLH hide sequence

RefSeq Acc Id:

XP_021590135 ⟸ XM_021734460

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASETHNVKKRNFSNNIEDHSIDLPRKKISNFTNKNMKEVKKSPKQLAAYINRTVGQAVKSPDK
LRKVIYRRKKVQHPFPNPCYRKKQSPISGGCDMANKENELACAGHLPEKLHHDSRTYLVNSSDS
GTSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGV
VVDCLPVLTNSLQEEKQYISLGCCVDLLPLVKSLLKSKFEENIQILKQQLSGLWEQENHLTLVP
GYTGNIAKDVDAYLLQLH

hide sequence

RefSeq Acc Id:

ENSSTOP00000003420 ⟸ ENSSTOT00000003816

Protein Domains

Katanin p80 subunit C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003813	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003816.3	UniProtKB/TrEMBL
InterPro	Katanin_C-terminal	UniProtKB/TrEMBL
	KATNBL1	UniProtKB/TrEMBL
NCBI Gene	Katnbl1	ENTREZGENE
PANTHER	KATNB1-LIKE PROTEIN 1	UniProtKB/TrEMBL
	PTHR14682	UniProtKB/TrEMBL
Pfam	Katanin_con80	UniProtKB/TrEMBL
UniProt	I3M320	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar