LOC101965130 (signal recognition particle 54 kDa protein) - Rat Genome Database

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Gene: LOC101965130 (signal recognition particle 54 kDa protein) Ictidomys tridecemlineatus
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Symbol: LOC101965130
Name: signal recognition particle 54 kDa protein
RGD ID: 12706859
Description: ENCODES a protein that exhibits 7S RNA binding (ortholog); endoplasmic reticulum signal peptide binding (ortholog); GDP binding (ortholog); INVOLVED IN granulocyte differentiation (ortholog); protein targeting to ER (ortholog); SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition (ortholog); ASSOCIATED WITH genetic disease (ortholog); severe congenital neutropenia 8 (ortholog); Shwachman-Diamond syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Fam177a1; family with sequence similarity 177 member A1; LOW QUALITY PROTEIN: protein FAM177A1; signal recognition particle 54; Srp54
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864045,677,956 - 45,741,100 (+)NCBI
SpeTri2.0NW_0049364949,183,620 - 9,220,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC101965130
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864045,677,956 - 45,741,100 (+)NCBI
SpeTri2.0NW_0049364949,183,620 - 9,220,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRP54
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1434,981,957 - 35,029,686 (+)EnsemblGRCh38hg38GRCh38
GRCh381434,982,981 - 35,029,567 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371435,452,198 - 35,498,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361434,521,982 - 34,568,519 (+)NCBINCBI36hg18NCBI36
Build 341434,521,981 - 34,568,517NCBI
Celera1415,315,912 - 15,362,600 (+)NCBI
Cytogenetic Map14q13.2NCBI
HuRef1415,564,659 - 15,611,702 (+)NCBIHuRef
CHM1_11435,450,690 - 35,497,725 (+)NCBICHM1_1
Srp54a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,127,261 - 55,162,152 (+)NCBIGRCm39mm39
GRCm39 Ensembl1255,127,047 - 55,162,152 (+)Ensembl
GRCm381255,080,476 - 55,115,367 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,080,262 - 55,115,367 (+)EnsemblGRCm38mm10GRCm38
MGSCv371256,181,483 - 56,216,354 (+)NCBIGRCm37mm9NCBIm37
MGSCv361255,998,696 - 56,031,814 (+)NCBImm8
Celera1256,371,141 - 56,408,843 (+)NCBICelera
Cytogenetic Map12C1NCBI
Srp54a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2672,587,582 - 72,645,154 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl672,587,605 - 72,625,189 (+)Ensembl
Rnor_6.0675,996,629 - 76,035,768 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl675,996,643 - 76,034,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,532,350 - 85,572,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,446,838 - 75,494,001 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1675,474,626 - 75,478,796 (+)NCBI
Celera671,428,873 - 71,466,500 (+)NCBICelera
Cytogenetic Map6q23NCBI
Srp54
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540925,977,226 - 26,016,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540925,977,226 - 26,016,351 (-)NCBIChiLan1.0ChiLan1.0
SRP54
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11433,920,330 - 33,966,023 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1433,920,287 - 34,017,151 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01415,733,446 - 15,779,987 (+)NCBIMhudiblu_PPA_v0panPan3
SRP54
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1813,800,275 - 13,837,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl813,677,760 - 13,837,722 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha813,597,521 - 13,634,635 (+)NCBI
ROS_Cfam_1.0813,907,202 - 13,944,631 (+)NCBI
UMICH_Zoey_3.1813,608,264 - 13,646,077 (+)NCBI
UNSW_CanFamBas_1.0813,673,490 - 13,710,632 (+)NCBI
UU_Cfam_GSD_1.0813,962,922 - 13,999,855 (+)NCBI
SRP54
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,828,874 - 64,877,193 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1764,829,625 - 64,877,574 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,658,033 - 69,706,782 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRP54
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12411,802,671 - 11,846,534 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2411,812,672 - 11,846,675 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666053764,178 - 808,147 (+)NCBIVero_WHO_p1.0
Srp54
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248381,697,863 - 1,747,115 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005322678   ⟹   XP_005322735
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,677,956 - 45,714,616 (+)NCBI
SpeTri2.0NW_0049364949,183,620 - 9,220,510 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724697   ⟹   XP_021580372
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,721,171 - 45,741,100 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724698   ⟹   XP_021580373
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,721,171 - 45,741,100 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274844   ⟹   XP_040130778
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,686,771 - 45,714,616 (+)NCBI
RefSeq Acc Id: XM_040274845   ⟹   XP_040130779
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,677,992 - 45,741,100 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005322735   ⟸   XM_005322678
- Peptide Label: isoform X1
- UniProtKB: I3MQS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130779   ⟸   XM_040274845
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040130778   ⟸   XM_040274844
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021580372   ⟸   XM_021724697
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021580373   ⟸   XM_021724698
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016023 ENTREZGENE
  ENSSTOG00000016027 ENTREZGENE
Ensembl Protein ENSSTOP00000014342 ENTREZGENE
NCBI Gene Srp54 ENTREZGENE
UniProt I3MQS5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101965130  signal recognition particle 54 kDa protein  Srp54  signal recognition particle 54  Symbol and/or name change 5135510 APPROVED
2021-03-25 Srp54  signal recognition particle 54  Fam177a1  family with sequence similarity 177 member A1  Data Merged 737654 PROVISIONAL