Cdon (cell adhesion associated, oncogene regulated) - Rat Genome Database

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Gene: Cdon (cell adhesion associated, oncogene regulated) Ictidomys tridecemlineatus
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Symbol: Cdon
Name: cell adhesion associated, oncogene regulated
RGD ID: 12705153
Description: INVOLVED IN anterior/posterior pattern specification (ortholog); cell adhesion (ortholog); cell fate specification (ortholog); PARTICIPATES IN Hedgehog signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH coloboma (ortholog); Dwarfism (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cell adhesion associated, oncogene regulated, transcript variant X1; cell adhesion associated, oncogene regulated, transcript variant X11; cell adhesion associated, oncogene regulated, transcript variant X12; cell adhesion associated, oncogene regulated, transcript variant X2; cell adhesion associated, oncogene regulated, transcript variant X3; cell adhesion associated, oncogene regulated, transcript variant X4; cell adhesion molecule-related/down-regulated by oncogenes; LOC110598700; uncharacterized LOC110598700
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,178,109 - 108,358,526 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Cdon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,178,109 - 108,358,526 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11125,955,796 - 126,063,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3811125,956,813 - 126,063,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711125,826,716 - 125,933,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,331,923 - 125,438,397 (-)NCBINCBI36hg18NCBI36
Build 3411125,335,783 - 125,438,397NCBI
Celera11122,988,054 - 123,098,575 (-)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11121,768,684 - 121,875,085 (-)NCBIHuRef
CHM1_111125,713,444 - 125,819,847 (-)NCBICHM1_1
Cdon
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,332,823 - 35,418,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl935,332,424 - 35,418,948 (+)Ensembl
GRCm38935,421,528 - 35,507,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,421,128 - 35,507,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,259,661 - 35,315,237 (+)NCBIGRCm37mm9NCBIm37
MGSCv36935,201,747 - 35,254,013 (+)NCBImm8
Celera932,686,755 - 32,744,725 (+)NCBICelera
Cytogenetic Map9A4NCBI
Cdon
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2833,775,123 - 33,861,635 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl836,625,733 - 36,710,949 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0836,625,757 - 36,712,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0836,642,905 - 36,728,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4835,238,899 - 35,291,743 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1835,247,664 - 35,300,509 (+)NCBI
Celera835,227,303 - 35,280,140 (+)NCBICelera
Cytogenetic Map8q21NCBI
Cdon
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBIChiLan1.0ChiLan1.0
CDON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111124,685,084 - 124,789,649 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,685,084 - 124,786,091 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011120,772,160 - 120,877,529 (-)NCBIMhudiblu_PPA_v0panPan3
CDON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,439,606 - 8,536,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,446,346 - 8,533,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBI
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBI
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBI
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBI
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBI
CDON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDON
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,091,778 - 117,255,354 (-)NCBI
ChlSab1.1 Ensembl1117,092,178 - 117,152,030 (-)Ensembl
Vero_WHO_p1.0NW_0236660438,742,602 - 8,983,460 (+)NCBI
Cdon
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624812107,632 - 203,791 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013360951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021730141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021730142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021730143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021730144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021730145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040285519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002484595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005733836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005733837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005733838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005733839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013360951   ⟹   XP_013216405
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,178,109 - 108,274,097 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730141   ⟹   XP_021585816
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,178,109 - 108,274,097 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730142   ⟹   XP_021585817
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,192,916 - 6,268,333 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730143   ⟹   XP_021585818
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,262,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730144   ⟹   XP_021585819
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,262,479 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730145   ⟹   XP_021585820
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,257,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285517   ⟹   XP_040141451
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,178,113 - 108,358,526 (-)NCBI
RefSeq Acc Id: XM_040285519   ⟹   XP_040141453
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,190,710 - 108,358,526 (-)NCBI
RefSeq Acc Id: XR_002484590
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,266,975 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002484591
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,265,704 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002484592
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,266,951 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002484593
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,266,955 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002484594
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,266,978 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002484595
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365726,176,267 - 6,262,594 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005733836
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,183,335 - 108,358,526 (-)NCBI
RefSeq Acc Id: XR_005733837
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,184,606 - 108,358,526 (-)NCBI
RefSeq Acc Id: XR_005733838
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,183,333 - 108,358,526 (-)NCBI
RefSeq Acc Id: XR_005733839
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947108,183,361 - 108,358,526 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013216405   ⟸   XM_013360951
- Peptide Label: isoform X2
- UniProtKB: I3M2Y0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585816   ⟸   XM_021730141
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021585818   ⟸   XM_021730143
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021585819   ⟸   XM_021730144
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021585820   ⟸   XM_021730145
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021585817   ⟸   XM_021730142
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040141451   ⟸   XM_040285517
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141453   ⟸   XM_040285519
- Peptide Label: isoform X3
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003762 ENTREZGENE
Ensembl Protein ENSSTOP00000003376 ENTREZGENE
NCBI Gene Cdon ENTREZGENE
UniProt I3M2Y0 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Cdon  cell adhesion associated, oncogene regulated  LOC110598700  uncharacterized LOC110598700  Data Merged 737654 PROVISIONAL