Gripap1 (GRIP1 associated protein 1) - Rat Genome Database

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Gene: Gripap1 (GRIP1 associated protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Gripap1
Name: GRIP1 associated protein 1
RGD ID: 12704236
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN negative regulation of protein localization (ortholog); negative regulation of receptor clustering (ortholog); neurotransmitter receptor transport, endosome to postsynaptic membrane (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); neurodegeneration with brain iron accumulation 5 (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); extrinsic component of postsynaptic early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GRIP1 associated protein 1, transcript variant X1; GRIP1 associated protein 1, transcript variant X2; GRIP1 associated protein 1, transcript variant X3; GRIP1 associated protein 1, transcript variant X4; GRIP1-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,652,314 - 34,676,582 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721891,824 - 916,984 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936721892,704 - 916,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gripap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,652,314 - 34,676,582 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721891,824 - 916,984 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936721892,704 - 916,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIPAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,973,723 - 49,002,264 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX48,973,720 - 49,002,265 (-)EnsemblGRCh38hg38GRCh38
GRCh37X48,830,134 - 48,858,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,715,078 - 48,743,619 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,589,582 - 48,614,923NCBI
CeleraX52,807,255 - 52,833,383 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,487,542 - 46,516,750 (-)NCBIHuRef
CHM1_1X48,861,436 - 48,889,990 (-)NCBICHM1_1
T2T-CHM13v2.0X48,384,190 - 48,412,744 (-)NCBIT2T-CHM13v2.0
Gripap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,656,009 - 7,686,806 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,656,004 - 7,686,806 (+)EnsemblGRCm39 Ensembl
GRCm38X7,789,961 - 7,820,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,789,765 - 7,820,567 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,367,121 - 7,397,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,946,954 - 6,977,522 (+)NCBIMGSCv36mm8
CeleraX3,649,702 - 3,680,935 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.51NCBI
Gripap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,678,898 - 14,708,679 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,492,440 - 19,522,378 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X20,560,734 - 20,590,671 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X16,825,905 - 16,855,840 (+)NCBIRnor_WKY
Rnor_6.0X15,523,929 - 15,553,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,523,929 - 15,553,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,305,164 - 16,334,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,713,439 - 26,743,461 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,766,907 - 26,796,928 (-)NCBI
CeleraX14,763,609 - 14,793,412 (-)NCBICelera
Cytogenetic MapXq12NCBI
Gripap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543500,340 - 527,267 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543500,340 - 527,243 (-)NCBIChiLan1.0ChiLan1.0
GRIPAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X49,128,760 - 49,157,059 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,128,760 - 49,157,059 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X41,271,762 - 41,300,327 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GRIPAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,121,646 - 42,145,330 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,121,301 - 42,145,218 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,497,529 - 16,520,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,258,246 - 42,281,569 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,257,921 - 42,281,517 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,244,505 - 42,267,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,232,713 - 42,255,999 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,326,953 - 42,350,247 (-)NCBIUU_Cfam_GSD_1.0
GRIPAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,043,029 - 43,070,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,043,613 - 43,070,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,897,905 - 47,917,864 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRIPAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,093,225 - 46,120,097 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,091,584 - 46,120,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,578,935 - 11,606,742 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gripap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893753,111 - 778,539 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893753,111 - 778,563 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014229   ⟹   ENSSTOP00000012745
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936721893,186 - 916,935 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034308   ⟹   ENSSTOP00000024807
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936721891,824 - 916,984 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036349   ⟹   ENSSTOP00000027826
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936721891,824 - 916,984 (-)Ensembl
RefSeq Acc Id: XM_005338665   ⟹   XP_005338722
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X34,652,314 - 34,676,566 (-)NCBI
SpeTri2.0NW_004936721892,707 - 916,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013364439   ⟹   XP_013219893
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X34,652,314 - 34,676,566 (-)NCBI
SpeTri2.0NW_004936721892,707 - 916,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013364440   ⟹   XP_013219894
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X34,652,314 - 34,676,582 (-)NCBI
SpeTri2.0NW_004936721892,704 - 916,965 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735523   ⟹   XP_021591198
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X34,652,314 - 34,676,566 (-)NCBI
SpeTri2.0NW_004936721892,707 - 916,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280533   ⟹   XP_040136467
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X34,652,314 - 34,676,423 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013219894   ⟸   XM_013364440
- Peptide Label: isoform X3
- UniProtKB: A0A287D2L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005338722   ⟸   XM_005338665
- Peptide Label: isoform X5
- UniProtKB: A0A287CU46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013219893   ⟸   XM_013364439
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021591198   ⟸   XM_021735523
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040136467   ⟸   XM_040280533
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000012745   ⟸   ENSSTOT00000014229
RefSeq Acc Id: ENSSTOP00000024807   ⟸   ENSSTOT00000034308
RefSeq Acc Id: ENSSTOP00000027826   ⟸   ENSSTOT00000036349


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014221 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000012745.3 UniProtKB/TrEMBL
  ENSSTOP00000024807 ENTREZGENE
  ENSSTOP00000024807.1 UniProtKB/TrEMBL
  ENSSTOP00000027826 ENTREZGENE
  ENSSTOP00000027826.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014229.3 UniProtKB/TrEMBL
  ENSSTOT00000034308.1 UniProtKB/TrEMBL
  ENSSTOT00000036349.1 UniProtKB/TrEMBL
InterPro GRIPAP1 UniProtKB/TrEMBL
NCBI Gene Gripap1 ENTREZGENE
PANTHER PTHR18978 UniProtKB/TrEMBL
UniProt A0A287CU46 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D2L7 ENTREZGENE, UniProtKB/TrEMBL
  I3MMI2_ICTTR UniProtKB/TrEMBL