Foxi2 (forkhead box I2) - Rat Genome Database

Name: Foxi2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Foxi2 (forkhead box I2) Ictidomys tridecemlineatus

Analyze

Symbol:

Foxi2

Name:

forkhead box I2

RGD ID:

12704188

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN anatomical structure morphogenesis (inferred); cell differentiation (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

forkhead box protein I2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXI2 (forkhead box I2)	NCBI	Ortholog
Mus musculus (house mouse):	Foxi2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Foxi2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Foxi2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXI2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FOXI2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXI2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FOXI2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxi2 (forkhead box I2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	10,239,422 - 10,241,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	15,320,044 - 15,321,691 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	15,320,044 - 15,321,691 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

distal 10q deletion syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure morphogenesis (IEA)

cell differentiation (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Foxi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	10,239,422 - 10,241,206 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	15,320,044 - 15,321,691 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	15,320,044 - 15,321,691 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXI2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	127,737,185 - 127,741,183 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	127,737,185 - 127,741,183 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	129,535,449 - 129,539,447 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	129,425,942 - 129,429,440 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	123,207,312 - 123,211,234 (+)	NCBI		Celera
Cytogenetic Map	10	q26.2	NCBI
HuRef	10	123,109,651 - 123,113,577 (+)	NCBI		HuRef
CHM1_1	10	129,818,007 - 129,821,915 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	128,633,615 - 128,637,627 (+)	NCBI		T2T-CHM13v2.0

Foxi2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	135,012,096 - 135,015,351 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	135,012,037 - 135,015,351 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	135,410,367 - 135,413,622 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	135,410,308 - 135,413,622 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	142,602,050 - 142,605,298 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	135,248,710 - 135,251,958 (+)	NCBI		MGSCv36	mm8
Celera	7	135,232,708 - 135,235,957 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	81.27	NCBI

Foxi2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	199,652,703 - 199,656,503 (+)	NCBI		GRCr8
mRatBN7.2	1	190,222,857 - 190,226,657 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	190,222,703 - 190,226,433 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	207,653,704 - 207,656,831 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	207,654,487 - 207,656,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	214,587,196 - 214,589,653 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	195,036,540 - 195,038,191 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	195,186,897 - 195,187,838 (+)	NCBI
Celera	1	187,937,460 - 187,940,587 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Foxi2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	5,548,812 - 5,551,313 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	5,548,676 - 5,552,882 (+)	NCBI	ChiLan1.0	ChiLan1.0

FOXI2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	139,615,597 - 139,617,287 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	139,620,948 - 139,622,638 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	124,325,031 - 124,327,965 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	128,574,023 - 128,576,782 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	128,574,023 - 128,576,782 (+)	Ensembl	panpan1.1		panPan2

FOXI2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	36,636,733 - 36,638,597 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	36,636,733 - 36,640,811 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	36,692,416 - 36,694,276 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	37,268,414 - 37,270,274 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	37,268,256 - 37,271,906 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	36,748,651 - 36,750,507 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	36,743,259 - 36,745,126 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	36,997,953 - 36,999,813 (+)	NCBI		UU_Cfam_GSD_1.0

FOXI2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	136,986,720 - 136,989,551 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	136,986,882 - 136,988,565 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	148,652,845 - 148,654,517 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FOXI2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	120,355,102 - 120,359,663 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	120,355,174 - 120,356,864 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	81,744,913 - 81,746,603 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Foxi2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	19,269,115 - 19,270,718 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	19,269,071 - 19,270,718 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005320769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000000813 ⟹ ENSSTOP00000000727

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936486	15,320,044 - 15,321,691 (+)	Ensembl

RefSeq Acc Id:

XM_005320769 ⟹ XP_005320826

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	10,239,422 - 10,241,206 (-)	NCBI
SpeTri2.0	NW_004936486	15,320,044 - 15,321,691 (+)	NCBI

Sequence:

show sequence

ATGAGTTTCCGTGCTGAACCTCCAGGCCAGGCCCGGGAGAGGCTGGACATGGCCGCGTACTGCG
ACGGACTGGGCGCCTGCTCAAACCCGCGCGGCCAGGCCCGGGCCACCGCAGCGCACCCCCCGGG
CTATGCACGCGGTGACCTGGGAACTGCAGGCGGTGGCCCGCGCCTGTGGGTGAATGCGCCCGCG
CTCAGCCCTGCGCCCTACGCGTCGGGCCCTGGACCCGCACCACCGTATGCAGCCCCCGGCTACG
CAGCCCCGAGCCCTCTCCTCGGCGCAGCGGGCGGCCTGGCGGGGGCCGACCTCGCGTGGCTGAG
CCTCTCGGGCCAACAGGAGCTACTGAGGCTGGTGCGGCCGCCCTACTCCTACTCAGCGCTCATC
GCCATGGCCATCCAGAGTGCGCCACTACGGAAGCTGACGCTCAGCCAGATCTACCAGTACGTGG
CCAGCAATTTCCCTTTCTACAAACGGAGCAAGGCGGGCTGGCAGAACTCTATCCGCCACAACCT
GTCGCTCAACGACTGCTTCAAGAAGGTGCCCCGCGACGAGAACGACCCGGGCAAAGGCAATTAC
TGGACCCTGGACCCCAACTGCGAGAAGATGTTCGACAATGGGAACTTCCGGAGGAAGAGGAAGA
GGAGAGGGGAGGCCAGTGCCGCCGCCCCCTCAGGAGTTAGAGACCCAGGGGGAAACCCCGCGCC
TGCGCTGGAGCCCCAGGGCGCAACCTCCCCCGACCTGCAGGCCTCGCCGTCCCCGCCCGCGCCC
GAGGCTGCCGCCTGTTTCTCCAGCTTCTCCTCGGCCATGGGCGCCCTGGCCGGCAGTCTAGGGG
CCTTCCCCGGGGGCCTGGCCCGCGACTTTCCCTTCGGGAGGCCAACGATGGTGCCCACGCAGAG
TCCCCAGACCCCTGGCCCCATGCCGGGCTTTGCCTCTGGCCATCAGACGACTGCCGCCGGCTTT
CGCGTCAGTAACCTTGTCTACAGCCGGGAAGGGACTGAAATCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005320826	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000727.2
GenBank Protein	KAG3263869	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005320826 ⟸ XM_005320769

- UniProtKB:

I3LXD9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSFRAEPPGQARERLDMAAYCDGLGACSNPRGQARATAAHPPGYARGDLGTAGGGPRLWVNAPA
LSPAPYASGPGPAPPYAAPGYAAPSPLLGAAGGLAGADLAWLSLSGQQELLRLVRPPYSYSALI
AMAIQSAPLRKLTLSQIYQYVASNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDENDPGKGNY
WTLDPNCEKMFDNGNFRRKRKRRGEASAAAPSGVRDPGGNPAPALEPQGATSPDLQASPSPPAP
EAAACFSSFSSAMGALAGSLGAFPGGLARDFPFGRPTMVPTQSPQTPGPMPGFASGHQTTAAGF
RVSNLVYSREGTEI

hide sequence

RefSeq Acc Id:

ENSSTOP00000000727 ⟸ ENSSTOT00000000813

Protein Domains

Fork-head

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000818	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000813.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Fork_head_dom	UniProtKB/TrEMBL
	TF_fork_head_CS_1	UniProtKB/TrEMBL
	TF_fork_head_CS_2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Foxi2	ENTREZGENE
PANTHER	FORKHEAD BOX PROTEIN	UniProtKB/TrEMBL
	FORKHEAD BOX PROTEIN I2	UniProtKB/TrEMBL
Pfam	Forkhead	UniProtKB/TrEMBL
PRINTS	FORKHEAD	UniProtKB/TrEMBL
PROSITE	FORK_HEAD_1	UniProtKB/TrEMBL
	FORK_HEAD_2	UniProtKB/TrEMBL
	FORK_HEAD_3	UniProtKB/TrEMBL
SMART	SM00339	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	I3LXD9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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