Cpt1a (carnitine palmitoyltransferase 1A) - Rat Genome Database

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Gene: Cpt1a (carnitine palmitoyltransferase 1A) Ictidomys tridecemlineatus
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Symbol: Cpt1a
Name: carnitine palmitoyltransferase 1A
RGD ID: 12704096
Description: ENCODES a protein that exhibits carnitine O-palmitoyltransferase activity (ortholog); identical protein binding (ortholog); palmitoleoyltransferase activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); cellular response to fatty acid (ortholog); eating behavior (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; carnitine palmitoyltransferase I deficiency pathway; ethylmalonic encephalopathy pathway; ASSOCIATED WITH alcoholic hepatitis (ortholog); Breast Neoplasms (ortholog); carnitine palmitoyltransferase I deficiency (ortholog); FOUND IN integral component of membrane (ortholog); integral component of mitochondrial outer membrane (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: carnitine O-palmitoyltransferase 1, liver isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,055,750 - 5,092,752 (+)NCBI
SpeTri2.0NW_0049365991,491,934 - 1,535,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Cpt1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,055,750 - 5,092,752 (+)NCBI
SpeTri2.0NW_0049365991,491,934 - 1,535,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1168,754,620 - 68,844,410 (-)EnsemblGRCh38hg38GRCh38
GRCh381168,754,620 - 68,844,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371168,522,088 - 68,609,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,278,664 - 68,365,881 (-)NCBINCBI36hg18NCBI36
Build 341168,281,656 - 68,365,881NCBI
Celera1165,858,303 - 65,945,748 (-)NCBI
Cytogenetic Map11q13.3NCBI
HuRef1164,858,312 - 64,945,656 (-)NCBIHuRef
CHM1_11168,405,839 - 68,493,144 (-)NCBICHM1_1
Cpt1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,372,328 - 3,435,735 (+)NCBIGRCm39mm39
GRCm39 Ensembl193,372,334 - 3,435,733 (+)Ensembl
GRCm38193,322,326 - 3,385,735 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,322,334 - 3,385,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,323,301 - 3,385,733 (+)NCBIGRCm37mm9NCBIm37
MGSCv36193,334,513 - 3,385,732 (+)NCBImm8
Celera193,192,535 - 3,255,204 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.08NCBI
Cpt1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21200,564,634 - 200,627,059 (+)NCBI
Rnor_6.0 Ensembl1218,569,510 - 218,629,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01218,568,157 - 218,629,679 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01225,436,031 - 225,497,586 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,852,800 - 205,912,972 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11206,006,198 - 206,066,422 (+)NCBI
Celera1198,121,771 - 198,182,510 (+)NCBICelera
Cytogenetic Map1q42NCBI
Cpt1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,109,256 - 17,159,838 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,105,887 - 17,159,696 (+)NCBIChiLan1.0ChiLan1.0
CPT1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11167,144,803 - 67,205,481 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1167,144,736 - 67,205,481 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01163,841,028 - 63,928,242 (-)NCBIMhudiblu_PPA_v0panPan3
CPT1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,136,691 - 49,190,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,136,691 - 49,190,117 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1847,743,088 - 47,799,620 (+)NCBI
ROS_Cfam_1.01849,940,828 - 50,105,306 (+)NCBI
UMICH_Zoey_3.11849,269,286 - 49,326,013 (+)NCBI
UNSW_CanFamBas_1.01848,842,887 - 48,899,833 (+)NCBI
UU_Cfam_GSD_1.01849,588,821 - 49,693,664 (+)NCBI
CPT1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,233,099 - 4,293,984 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,250,642 - 4,293,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.222,844,854 - 2,874,141 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPT1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115,704,275 - 5,784,077 (+)NCBI
ChlSab1.1 Ensembl15,730,853 - 5,784,337 (+)Ensembl
Cpt1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476718,109,011 - 18,161,378 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013361980   ⟹   XP_013217434
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049475,055,750 - 5,092,752 (+)NCBI
SpeTri2.0NW_0049365991,491,934 - 1,535,101 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731709   ⟹   XP_021587384
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365991,492,911 - 1,535,101 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013217434 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013217434   ⟸   XM_013361980
- UniProtKB: I3MJY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021587384   ⟸   XM_021731709
- Sequence:
Protein Domains
Carn_acyltransf   CPT_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012856 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011534 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012869 UniProtKB/TrEMBL
Gene3D-CATH 3.30.559.40 UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans_1 UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/TrEMBL
  CPT_N UniProtKB/TrEMBL
NCBI Gene Cpt1a ENTREZGENE
PANTHER PTHR22589 UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/TrEMBL
  CPT_N UniProtKB/TrEMBL
PROSITE ACYLTRANSF_C_1 UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/TrEMBL
UniProt I3MJY4 ENTREZGENE, UniProtKB/TrEMBL