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Gene: Ccdc87 (coiled-coil domain containing 87) Ictidomys tridecemlineatus

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Symbol:

Ccdc87

Name:

coiled-coil domain containing 87

RGD ID:

12703484

Description:

INVOLVED IN positive regulation of acrosome reaction (ortholog); positive regulation of fertilization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); intellectual disability (ortholog); Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 87

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	6,562,699 - 6,565,919 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936599	3,005,067 - 3,008,053 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

intellectual disability (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of acrosome reaction (ISO)

positive regulation of fertilization (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Ccdc87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	6,562,699 - 6,565,919 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936599	3,005,067 - 3,008,053 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC87
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	66,590,176 - 66,593,063 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	66,590,176 - 66,593,063 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	66,357,647 - 66,360,534 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	66,114,216 - 66,117,130 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	62,685,282 - 62,688,197 (-)	NCBI		HuRef
CHM1_1	11	66,241,371 - 66,244,285 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	66,586,422 - 66,589,309 (-)	NCBI		T2T-CHM13v2.0

Ccdc87
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	4,889,394 - 4,892,556 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	4,889,394 - 4,892,556 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	4,839,366 - 4,842,528 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	4,839,366 - 4,842,528 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	4,839,366 - 4,842,528 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	4,839,415 - 4,842,163 (+)	NCBI		MGSCv36	mm8
Celera	19	4,710,421 - 4,713,583 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.11	NCBI

Ccdc87
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	211,564,419 - 211,567,115 (+)	NCBI		GRCr8
mRatBN7.2	1	202,135,021 - 202,137,717 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	202,134,963 - 202,138,337 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	210,488,160 - 210,490,856 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	217,580,453 - 217,583,149 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	210,271,475 - 210,274,171 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	220,096,478 - 220,099,174 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	220,096,422 - 220,099,611 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	227,027,475 - 227,030,171 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	207,451,155 - 207,453,851 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	199,675,524 - 199,678,217 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Ccdc87
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955422	18,772,869 - 18,775,548 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC87
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	67,814,623 - 67,818,231 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	68,857,399 - 68,861,008 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	61,946,954 - 61,949,840 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	65,270,801 - 65,273,720 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CCDC87
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	50,759,378 - 50,762,205 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	50,759,436 - 50,762,057 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	49,368,112 - 49,370,929 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	51,790,913 - 51,793,730 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	51,790,961 - 51,793,582 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	50,892,297 - 50,895,114 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	50,472,130 - 50,474,948 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	51,261,982 - 51,264,800 (+)	NCBI		UU_Cfam_GSD_1.0

CCDC87
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	5,833,464 - 5,836,686 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	5,833,431 - 5,838,922 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	4,863,943 - 4,867,188 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC87
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	7,686,514 - 7,689,390 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	7,686,575 - 7,689,061 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	104,970,062 - 104,972,985 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc87
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	19,815,707 - 19,818,268 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	19,815,664 - 19,818,796 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005333553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005333553 ⟹ XP_005333610

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	6,562,699 - 6,565,919 (+)	NCBI
SpeTri2.0	NW_004936599	3,005,067 - 3,008,053 (+)	NCBI

Sequence:

show sequence

GGGCCTTCGGGCCCTGGTTACCTTAGTAACCATTTGGCGTCCTCTGCCCGGACGGAGGGCTCCG
CCTGCGCTAAGATGGATCCCCCGAAGGTAGAGTCCGAGTTACAGCGGTTTTATCACCAGTTGCT
GAGCCCGCTGTCACTCTTACCCCGCAGGGTGACGCCCCCAGAGCCTCAGAAGCGCAGCCCGCAG
GTCTCGAGAGTGCAAACCGTGTCTCTGGCAAAGCTGAGGGTGGCGCCGCTGTGCCGCCAGGTGG
CCAAGCTGCTGGCCAACAGCGGGCTGGCGTCCTGGGTGCCTTCTGAAGGCCGACTCCGTCTCAC
CAAGGTCATCCTGGACGAACTAAAGTGCAGCTGGCGGGAGCCTCCTGCTGAACCTAGTCTGAGC
TACGAGAACAACCAGAAGCTGAGGAAGCGACTCGAGACTTACGTGCTGCTCAGCTGTGAGCAGC
TCTTTTTACGCTACCTGCACCTGCTGGTGACTATGTCGACCATGTCGAAGGTCTTCACTGAATC
AGCCACCCTCACCCGGTTGGCTGCCAGCCTTGCCAGTGATTGCACAATCTTCCTTACCAGTCCC
GACGTCTACCGTTGCCTGCTCGCGGATTTCCAAACCCTTCTGAAGGCAGAGCACACCCACAGCA
GCATGGACAAGCGGCGCCCACCCTGCCCCATTGGGCCTTTCAAACTGTGCCCGATCCCCTGGCC
TCACAGCACCGGCTTCGCGGAAGTGCCATGCTCTAGCCTCAACCTGAACTACCTTGTCCAACTC
AGCCGCTCACAGGAGTTTTTCACTGAGCCTGAATTGGATCCAGTGAAGGAATTGAAGTCCATCC
CTCAGTTGAAGAGTAGAAAGCCTCTCCGCTGGCTGCCTACTATAAGAAAAGAGAAAGAAATCGA
CTTCAGTTCTAAACAGATGGTGTCAATTCCCAGCCACTCTGTGAGTCCCACCAGTAGAGGTTCC
CTCCCCCATTCTTTGCCTGTCCTTTCCCAGCCACAGAGAAGCCAATCCATGCCTTGTCTTCGTG
AAGACTGGAAGCTGGCAGATAAATTGGGTCTTTCTACACTCCCTTCTCGTTCCTTTACCCCTCT
GGTCTTGGCTCCAGGAGAAAGCAAACCAAAGCTGACTAGGGACATTGTGGCTGCGGATCTGAAG
CAGATGATAAAGAACATGAAGTTGGAGTGGACTCACTACTCAGCATTGGACTCTGGCTTGCCCC
CACTCCTGGGGGTTGTGACCTACCACCCAGCTGCCAGGCATCACCTGGAGGAGCTGCAGAGAAT
GTTAAAGAGCTTCCAGGAAAGAGAAGCCTTTGGACAGTGGGACCACCTGCACCTCAAATCCCCT
CCACTTTATCCACAGCCAGTGACTACTACTTTGAAGTTGAAAAATAAAGTCGTGGTCCAGGCAG
CAGCTGTGCGACTTTCTGATAGAAACTTTTTGGACTCTTTCCATGTTGAGGGGCCCAGAGTCTT
GTACAACCACCTGGCTGGTGAATTGGACTCCAAAGTTATAGATGAAATGGATATAGAGCGCCTC
ATTGGCAGTAGCACCAAGGAGGTCTATGAAGAGTTGATGAGCCGTGTCTCTACTGACCATTTCT
GTTTTGACCAAGGACCTCTGGTTGAACCTGCAGCAGATAAAGACTGGTCAGCCTTCCTGTCCTC
AGCCTTTCTGCGCCATGAAAAACAATTTCAAATAGTCAACCCTGATCTGACTGGACTTTACCAG
AGAACAAATGTTTTGCAGTCGGACGCTGAGAGGATGCCTTCTCCCCCACCACCCCAACCAAGCA
AAGGCTGGGAAAAGCGGTCAAAGAAGATCTCCTGGCTGACCTGGTGGAAAAGCACCCTGTCTGT
GGATGACTACTTCAAGTACCTCACCAACCAGGAGACAGATTTCCTCCATGTCATCTTCCAGATG
TTTGAAGAGGAGGCACCTGTGGAGGTTCCAGTATGCATCAAAGAGTCCCCAGTTATTCAGCGGC
CCCCTCCCTTGTTAGAGGATGAAGAGCCAGACTTTGTGCCAGGAGAGTGGGATTGGAACACAGT
GCTGGAGAACAGACTGGAAGGTGATAAGAACCAGATCCTGAGCCTGCAGAAGCGTCTAGAACGA
CTGTGGTCTGTTCTCGAGGTCCCTCACAACGTCCGGCTGGACATGGCCATCAAGTACAGCTCCA
AAGCCCGTCTGAGGCAGCTGCCCTCATTAGTAAGGGCCTGGGAACGGGCCTTGAAGCCCATTCA
GCTGCGGGAGGTATTGCTGGCGAGACTGGAGTGGTTTGAACAGCGAGCCTCTGACCCCAACCGC
TTCTTCCAAAAGTCTGAATTGGGCCTGAGTCATCTCCTGCAGGAAAATCAGTTACGCAGCTATT
TCCACAGGAAGCTCAATCAAATTGAGGCTTCTTTGGTTTCCCTCCTGAAGGAGATTGAATTAAT
CTTTGGTGAACCAGTGACCTTCAAGGGACAGCGCTACATAGACAAGATGAAATGGGACAAAGTG
GAGATGCTCTACTGGCTGCAACAGCAGCGGCGGGTTCACTACCTGGGCCAGGACAAAAAGGCCT
CCCAGCAATCAGCCCGGTTCAAAAGGCATAACAGCCAGTCTTTACTAGTTCCTGGGAACACGCC
CAATACCCTTTAACCAGACCAAGCATCCTCAAATCTCTCCCTCATCTCCAAACACTCAGCAGCT
CATCCAGACCTCTTGATGGCTTTGGAAGAAGAAATATGGGTATCTCTAGCTGGGGGTGCAGGTC
TCAGGAGCATTGCACTTCGAACTACAAAGGACTGAGATTTAGTCTTTGAAAGTGAAGTTCTCAC
AAAAGAATTCCCAAGTCCAGTATTCCCATTTATGTCAACAGCCTGGTAGAATATAACCAAAATC
TCTTATCAAAAGAACTGAGACTGTCCCTTACAAAACATCAGACAGACAAACCATAATCTTTGGA
ACATTCTTGTCCTTTAGCATTTCTATCTTAGAAATAAATTGGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005333610	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3284619	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005333610 ⟸ XM_005333553

- Sequence:

show sequence

MDPPKVESELQRFYHQLLSPLSLLPRRVTPPEPQKRSPQVSRVQTVSLAKLRVAPLCRQVAKLL
ANSGLASWVPSEGRLRLTKVILDELKCSWREPPAEPSLSYENNQKLRKRLETYVLLSCEQLFLR
YLHLLVTMSTMSKVFTESATLTRLAASLASDCTIFLTSPDVYRCLLADFQTLLKAEHTHSSMDK
RRPPCPIGPFKLCPIPWPHSTGFAEVPCSSLNLNYLVQLSRSQEFFTEPELDPVKELKSIPQLK
SRKPLRWLPTIRKEKEIDFSSKQMVSIPSHSVSPTSRGSLPHSLPVLSQPQRSQSMPCLREDWK
LADKLGLSTLPSRSFTPLVLAPGESKPKLTRDIVAADLKQMIKNMKLEWTHYSALDSGLPPLLG
VVTYHPAARHHLEELQRMLKSFQEREAFGQWDHLHLKSPPLYPQPVTTTLKLKNKVVVQAAAVR
LSDRNFLDSFHVEGPRVLYNHLAGELDSKVIDEMDIERLIGSSTKEVYEELMSRVSTDHFCFDQ
GPLVEPAADKDWSAFLSSAFLRHEKQFQIVNPDLTGLYQRTNVLQSDAERMPSPPPPQPSKGWE
KRSKKISWLTWWKSTLSVDDYFKYLTNQETDFLHVIFQMFEEEAPVEVPVCIKESPVIQRPPPL
LEDEEPDFVPGEWDWNTVLENRLEGDKNQILSLQKRLERLWSVLEVPHNVRLDMAIKYSSKARL
RQLPSLVRAWERALKPIQLREVLLARLEWFEQRASDPNRFFQKSELGLSHLLQENQLRSYFHRK
LNQIEASLVSLLKEIELIFGEPVTFKGQRYIDKMKWDKVEMLYWLQQQRRVHYLGQDKKASQQS
ARFKRHNSQSLLVPGNTPNTL

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Ccdc87	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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