Lamb3 (laminin subunit beta 3) - Rat Genome Database

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Gene: Lamb3 (laminin subunit beta 3) Ictidomys tridecemlineatus
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Symbol: Lamb3
Name: laminin subunit beta 3
RGD ID: 12702698
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); endodermal cell differentiation (ortholog); ASSOCIATED WITH amelogenesis imperfecta type 1A (ortholog); autistic disorder (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN basement membrane (ortholog); laminin-5 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: laminin subunit beta-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,190,090 - 66,247,713 (+)NCBI
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Lamb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,190,090 - 66,247,713 (+)NCBI
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1209,614,870 - 209,652,425 (-)EnsemblGRCh38hg38GRCh38
GRCh381209,614,870 - 209,652,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371209,788,215 - 209,825,770 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361207,854,838 - 207,892,443 (-)NCBINCBI36hg18NCBI36
Build 341206,176,639 - 206,214,152NCBI
Celera1183,019,124 - 183,056,711 (-)NCBI
Cytogenetic Map1q32.2NCBI
HuRef1180,463,503 - 180,501,095 (-)NCBIHuRef
CHM1_11211,060,621 - 211,098,219 (-)NCBICHM1_1
Lamb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,976,661 - 193,026,186 (+)NCBIGRCm39mm39
GRCm39 Ensembl1192,890,007 - 193,026,186 (+)Ensembl
GRCm381193,294,353 - 193,343,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,207,699 - 193,343,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv371195,128,188 - 195,170,072 (+)NCBIGRCm37mm9NCBIm37
MGSCv361195,002,753 - 195,044,602 (+)NCBImm8
Celera1200,179,164 - 200,221,182 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.71NCBI
Lamb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.213104,833,810 - 104,875,405 (+)NCBI
Rnor_6.0 Ensembl13112,031,594 - 112,073,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013112,031,614 - 112,073,187 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013116,587,097 - 116,628,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413109,148,815 - 109,190,322 (+)NCBIRGSC3.4rn4RGSC3.4
Celera13104,263,258 - 104,304,743 (+)NCBICelera
Cytogenetic Map13q27NCBI
Lamb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554892,568,650 - 2,607,595 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554892,547,611 - 2,603,079 (+)NCBIChiLan1.0ChiLan1.0
LAMB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11189,996,634 - 190,034,206 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1189,996,639 - 190,034,206 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01185,191,401 - 185,245,154 (-)NCBIMhudiblu_PPA_v0panPan3
LAMB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.178,272,326 - 8,313,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl78,272,736 - 8,310,474 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha77,849,692 - 7,976,332 (-)NCBI
ROS_Cfam_1.077,973,087 - 8,099,489 (-)NCBI
UMICH_Zoey_3.177,902,916 - 8,029,231 (-)NCBI
UNSW_CanFamBas_1.078,000,050 - 8,126,276 (-)NCBI
UU_Cfam_GSD_1.078,060,953 - 8,187,735 (-)NCBI
LAMB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9133,311,834 - 133,351,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19133,298,009 - 133,351,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29146,594,591 - 146,598,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMB3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12519,805,234 - 19,856,025 (+)NCBI
ChlSab1.1 Ensembl2519,807,045 - 19,846,684 (+)Ensembl
Lamb3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248072,320,168 - 2,378,349 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021729219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040276684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040276686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005329465   ⟹   XP_005329522
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934466,190,090 - 66,247,713 (+)NCBI
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729201   ⟹   XP_021584876
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729202   ⟹   XP_021584877
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729203   ⟹   XP_021584878
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729204   ⟹   XP_021584879
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729205   ⟹   XP_021584880
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729206   ⟹   XP_021584881
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729207   ⟹   XP_021584882
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729208   ⟹   XP_021584883
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729209   ⟹   XP_021584884
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729210   ⟹   XP_021584885
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729211   ⟹   XP_021584886
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729212   ⟹   XP_021584887
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729213   ⟹   XP_021584888
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729214   ⟹   XP_021584889
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,430,905 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729215   ⟹   XP_021584890
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729216   ⟹   XP_021584891
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,429,488 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729217   ⟹   XP_021584892
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934466,208,899 - 66,247,713 (+)NCBI
SpeTri2.0NW_0049365573,446,618 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729218   ⟹   XP_021584893
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365573,446,618 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729219   ⟹   XP_021584894
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934466,203,233 - 66,247,713 (+)NCBI
SpeTri2.0NW_0049365573,450,610 - 3,487,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276684   ⟹   XP_040132618
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934466,190,090 - 66,247,713 (+)NCBI
RefSeq Acc Id: XM_040276686   ⟹   XP_040132620
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934466,208,899 - 66,247,713 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005329522   ⟸   XM_005329465
- Sequence:
RefSeq Acc Id: XP_021584877   ⟸   XM_021729202
- Sequence:
RefSeq Acc Id: XP_021584878   ⟸   XM_021729203
- Sequence:
RefSeq Acc Id: XP_021584887   ⟸   XM_021729212
- Sequence:
RefSeq Acc Id: XP_021584879   ⟸   XM_021729204
- Sequence:
RefSeq Acc Id: XP_021584884   ⟸   XM_021729209
- Sequence:
RefSeq Acc Id: XP_021584880   ⟸   XM_021729205
- Sequence:
RefSeq Acc Id: XP_021584876   ⟸   XM_021729201
- Sequence:
RefSeq Acc Id: XP_021584881   ⟸   XM_021729206
- Sequence:
RefSeq Acc Id: XP_021584882   ⟸   XM_021729207
- Sequence:
RefSeq Acc Id: XP_021584891   ⟸   XM_021729216
- Sequence:
RefSeq Acc Id: XP_021584885   ⟸   XM_021729210
- Sequence:
RefSeq Acc Id: XP_021584890   ⟸   XM_021729215
- Sequence:
RefSeq Acc Id: XP_021584883   ⟸   XM_021729208
- Sequence:
RefSeq Acc Id: XP_021584886   ⟸   XM_021729211
- Sequence:
RefSeq Acc Id: XP_021584888   ⟸   XM_021729213
- Sequence:
RefSeq Acc Id: XP_021584889   ⟸   XM_021729214
- Sequence:
RefSeq Acc Id: XP_021584892   ⟸   XM_021729217
- Sequence:
RefSeq Acc Id: XP_021584893   ⟸   XM_021729218
- Sequence:
RefSeq Acc Id: XP_021584894   ⟸   XM_021729219
- Sequence:
RefSeq Acc Id: XP_040132618   ⟸   XM_040276684
RefSeq Acc Id: XP_040132620   ⟸   XM_040276686

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023256 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000016223 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020073 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1490 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  Laminin_N_sf UniProtKB/TrEMBL
NCBI Gene Lamb3 ENTREZGENE
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
UniProt I3MVS8_ICTTR UniProtKB/TrEMBL