Il17f (interleukin 17F) - Rat Genome Database

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Gene: Il17f (interleukin 17F) Ictidomys tridecemlineatus
Analyze
Symbol: Il17f
Name: interleukin 17F
RGD ID: 12701438
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine binding (inferred); cytokine receptor binding (inferred); INVOLVED IN positive regulation of cytokine production involved in inflammatory response (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; ASSOCIATED WITH Candidiasis, Familial, 6 (ortholog); genetic disease (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494655,379,286 - 55,380,920 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364768,574,387 - 8,580,916 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364768,579,282 - 8,580,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Il17f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494655,379,286 - 55,380,920 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364768,574,387 - 8,580,916 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364768,579,282 - 8,580,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38652,236,681 - 52,245,689 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl652,236,681 - 52,245,689 (-)EnsemblGRCh38hg38GRCh38
GRCh37652,101,479 - 52,109,298 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36652,209,443 - 52,217,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 34652,209,442 - 52,217,257NCBI
Celera653,762,606 - 53,770,421 (-)NCBICelera
Cytogenetic Map6p12.2NCBI
HuRef651,932,711 - 51,940,522 (-)NCBIHuRef
CHM1_1652,103,743 - 52,111,557 (-)NCBICHM1_1
T2T-CHM13v2.0652,075,437 - 52,084,442 (-)NCBIT2T-CHM13v2.0
Il17f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39120,847,370 - 20,855,498 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl120,847,370 - 20,860,841 (-)EnsemblGRCm39 Ensembl
GRCm38120,777,146 - 20,785,274 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,777,146 - 20,790,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv37120,767,227 - 20,774,351 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36120,762,918 - 20,764,663 (-)NCBIMGSCv36mm8
Celera120,651,214 - 20,658,338 (-)NCBICelera
Cytogenetic Map1A4NCBI
cM Map16.49NCBI
Il17f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8930,686,532 - 30,697,918 (-)NCBIGRCr8
mRatBN7.2923,190,094 - 23,201,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl923,190,100 - 23,201,482 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx931,687,255 - 31,698,635 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0936,807,980 - 36,819,360 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0935,123,245 - 35,134,625 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0926,885,702 - 26,897,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl926,885,708 - 26,897,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0925,742,088 - 25,753,605 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4919,507,952 - 19,519,338 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1919,505,279 - 19,516,660 (-)NCBI
Celera920,765,976 - 20,777,363 (-)NCBICelera
Cytogenetic Map9q13NCBI
Il17f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554115,852,767 - 5,859,208 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554115,852,767 - 5,859,208 (+)NCBIChiLan1.0ChiLan1.0
IL17F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2566,704,846 - 66,713,100 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1662,581,667 - 62,589,927 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0651,789,210 - 51,797,470 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1653,057,313 - 53,065,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl653,057,318 - 53,065,124 (-)Ensemblpanpan1.1panPan2
IL17F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11219,904,283 - 19,908,497 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1219,904,126 - 19,908,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1219,801,660 - 19,805,553 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01220,403,156 - 20,407,042 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11219,909,305 - 19,913,193 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01220,012,473 - 20,016,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01220,150,933 - 20,154,815 (-)NCBIUU_Cfam_GSD_1.0
IL17F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,059,002 - 46,077,048 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,058,371 - 46,066,039 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2752,508,706 - 52,516,123 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL17F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11720,263,252 - 20,272,234 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1720,264,481 - 20,271,982 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604452,133,830 - 52,147,127 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il17f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248553,848,409 - 3,867,175 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248553,865,559 - 3,867,175 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005318853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000002265   ⟹   ENSSTOP00000002023
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364768,574,387 - 8,580,916 (+)Ensembl
RefSeq Acc Id: XM_005318853   ⟹   XP_005318910
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494655,379,286 - 55,380,920 (-)NCBI
SpeTri2.0NW_0049364768,579,282 - 8,580,916 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002023.3
GenBank Protein KAG3289629 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005318910   ⟸   XM_005318853
- UniProtKB: I3M032 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000002023   ⟸   ENSSTOT00000002265


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002268 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002265.3 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  IL-17_chr UniProtKB/TrEMBL
  IL-17_fam UniProtKB/TrEMBL
NCBI Gene Il17f ENTREZGENE
Pfam IL17 UniProtKB/TrEMBL
PRINTS INTRLEUKIN17 UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt I3M032 ENTREZGENE, UniProtKB/TrEMBL