Bmf (Bcl2 modifying factor) - Rat Genome Database

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Gene: Bmf (Bcl2 modifying factor) Ictidomys tridecemlineatus
Analyze
Symbol: Bmf
Name: Bcl2 modifying factor
RGD ID: 12700925
Description: INVOLVED IN anoikis (ortholog); cellular response to starvation (ortholog); negative regulation of apoptotic signaling pathway (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN acrosomal vesicle (ortholog); actin cytoskeleton (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bcl-2-modifying factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,725,364 - 85,746,902 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,577,221 - 3,594,981 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,573,437 - 3,594,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bmf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,725,364 - 85,746,902 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,577,221 - 3,594,981 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,573,437 - 3,594,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,087,890 - 40,108,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,087,890 - 40,108,892 (-)EnsemblGRCh38hg38GRCh38
GRCh371540,380,091 - 40,401,080 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,167,383 - 38,188,367 (-)NCBINCBI36Build 36hg18NCBI36
Build 341538,167,385 - 38,185,931NCBI
Celera1517,145,999 - 17,167,002 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,223,445 - 17,244,440 (-)NCBIHuRef
CHM1_11540,499,972 - 40,520,967 (-)NCBICHM1_1
T2T-CHM13v2.01537,894,726 - 37,915,713 (-)NCBIT2T-CHM13v2.0
Bmf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,359,238 - 118,385,240 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,359,238 - 118,380,168 (-)EnsemblGRCm39 Ensembl
GRCm382118,528,757 - 118,549,686 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,528,757 - 118,549,687 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,354,493 - 118,375,414 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,220,198 - 118,241,119 (-)NCBIMGSCv36mm8
Celera2119,683,712 - 119,704,619 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.4NCBI
Bmf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83125,953,466 - 125,974,087 (-)NCBIGRCr8
mRatBN7.23105,499,534 - 105,520,159 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,499,538 - 105,520,145 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3109,173,179 - 109,193,801 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03117,768,734 - 117,789,356 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03115,429,111 - 115,449,729 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,303,515 - 110,324,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,306,067 - 110,324,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03116,849,170 - 116,869,775 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43104,966,652 - 104,984,752 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13104,863,079 - 104,881,180 (-)NCBI
Celera3104,419,059 - 104,437,108 (-)NCBICelera
Cytogenetic Map3q35NCBI
Bmf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,052,290 - 7,068,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,048,654 - 7,068,917 (-)NCBIChiLan1.0ChiLan1.0
BMF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,326,014 - 29,346,967 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,477,360 - 33,498,321 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,026,053 - 19,047,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,281,655 - 37,302,365 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,281,655 - 37,302,075 (-)Ensemblpanpan1.1panPan2
BMF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,301,000 - 7,321,949 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,274,174 - 7,322,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,355,731 - 7,376,675 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,429,431 - 7,450,406 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,402,587 - 7,450,406 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,351,934 - 7,372,873 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,458,286 - 7,479,257 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,586,431 - 7,607,394 (-)NCBIUU_Cfam_GSD_1.0
BMF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1131,178,315 - 131,200,393 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11131,178,021 - 131,199,668 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BMF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,893,997 - 42,915,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,894,460 - 42,915,062 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,040,714 - 98,061,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,423,547 - 7,440,014 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,420,003 - 7,440,012 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009570   ⟹   ENSSTOP00000008584
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364713,577,221 - 3,594,981 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034148   ⟹   ENSSTOP00000025954
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364713,577,221 - 3,592,393 (-)Ensembl
RefSeq Acc Id: XM_021725724   ⟹   XP_021581399
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864085,725,364 - 85,746,748 (-)NCBI
SpeTri2.0NW_0049364713,573,437 - 3,594,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275209   ⟹   XP_040131143
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864085,725,364 - 85,746,756 (-)NCBI
RefSeq Acc Id: XM_040275210   ⟹   XP_040131144
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864085,725,364 - 85,746,902 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021581399 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131143 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131144 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008584.3
  ENSSTOP00000025954.1
GenBank Protein KAG3261602 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021581399   ⟸   XM_021725724
- Peptide Label: isoform X1
- UniProtKB: I3MDS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131144   ⟸   XM_040275210
- Peptide Label: isoform X3
- UniProtKB: A0A287CXH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131143   ⟸   XM_040275209
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000025954   ⟸   ENSSTOT00000034148
RefSeq Acc Id: ENSSTOP00000008584   ⟸   ENSSTOT00000009570


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009580 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009570.3 UniProtKB/TrEMBL
  ENSSTOT00000034148.1 UniProtKB/TrEMBL
InterPro BMF UniProtKB/TrEMBL
NCBI Gene Bmf ENTREZGENE
PANTHER BCL-2-MODIFYING FACTOR UniProtKB/TrEMBL
  PTHR32014 UniProtKB/TrEMBL
Pfam BMF UniProtKB/TrEMBL
UniProt A0A287CXH0 ENTREZGENE, UniProtKB/TrEMBL
  I3MDS9 ENTREZGENE, UniProtKB/TrEMBL