Sdr9c7 (short chain dehydrogenase/reductase family 9C member 7) - Rat Genome Database

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Gene: Sdr9c7 (short chain dehydrogenase/reductase family 9C member 7) Ictidomys tridecemlineatus
Analyze
Symbol: Sdr9c7
Name: short chain dehydrogenase/reductase family 9C member 7
RGD ID: 12700148
Description: ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (inferred); oxidoreductase activity (inferred); INVOLVED IN retinol metabolic process (inferred); steroid metabolic process (inferred); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 13 (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: short-chain dehydrogenase/reductase family 9C member 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,687,192 - 57,699,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,171,736 - 1,182,929 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,170,855 - 1,190,797 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Sdr9c7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,687,192 - 57,699,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,171,736 - 1,182,929 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,170,855 - 1,190,797 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDR9C7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,923,133 - 56,934,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,923,133 - 56,934,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,316,917 - 57,328,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,603,884 - 55,614,312 (-)NCBINCBI36Build 36hg18NCBI36
Build 341255,603,883 - 55,614,312NCBI
Celera1256,970,828 - 56,982,079 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,355,696 - 54,366,948 (-)NCBIHuRef
CHM1_11257,284,687 - 57,295,939 (-)NCBICHM1_1
T2T-CHM13v2.01256,891,006 - 56,902,282 (-)NCBIT2T-CHM13v2.0
Sdr9c7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,734,404 - 127,747,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,734,387 - 127,747,630 (+)EnsemblGRCm39 Ensembl
GRCm3810127,898,535 - 127,911,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,898,518 - 127,911,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,335,591 - 127,348,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,301,484 - 127,314,710 (+)NCBIMGSCv36mm8
Celera10130,293,174 - 130,306,875 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.39NCBI
Sdr9c7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,588,726 - 65,607,534 (+)NCBIGRCr8
mRatBN7.2763,703,788 - 63,720,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,707,071 - 63,721,480 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0771,152,366 - 71,169,510 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,157,664 - 71,170,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,324,590 - 71,341,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,850,985 - 67,863,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,875,496 - 67,883,938 (+)NCBI
Celera760,836,062 - 60,853,128 (+)NCBICelera
Cytogenetic Map7q22NCBI
Sdr9c7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,537,943 - 4,551,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,538,113 - 4,551,586 (-)NCBIChiLan1.0ChiLan1.0
SDR9C7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,397,296 - 37,408,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,394,066 - 37,405,385 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,983,412 - 31,994,584 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,236,402 - 32,247,688 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,236,402 - 32,247,688 (+)Ensemblpanpan1.1panPan2
SDR9C7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,112,832 - 1,121,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,112,896 - 1,120,720 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,177,259 - 1,185,147 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,123,804 - 1,131,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,123,868 - 1,132,058 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,100,717 - 1,108,622 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,342,554 - 1,350,459 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,467,318 - 1,475,223 (-)NCBIUU_Cfam_GSD_1.0
SDR9C7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,228,042 - 22,244,528 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,228,041 - 22,251,622 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,109,291 - 24,130,717 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDR9C7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,819,041 - 52,831,778 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,819,957 - 52,830,249 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,137,169 - 193,158,153 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdr9c7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,008,800 - 11,019,788 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,008,727 - 11,020,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005335650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000029217   ⟹   ENSSTOP00000018467
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,171,736 - 1,182,929 (-)Ensembl
RefSeq Acc Id: XM_005335650   ⟹   XP_005335707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,687,192 - 57,699,891 (+)NCBI
SpeTri2.0NW_0049366461,170,855 - 1,190,797 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005335707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018467.1
GenBank Protein KAG3291579 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005335707   ⟸   XM_005335650
- UniProtKB: I3N271 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018467   ⟸   ENSSTOT00000029217


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026458 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029217.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene Sdr9c7 ENTREZGENE
PANTHER PTHR43313:SF5 UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt I3N271 ENTREZGENE, UniProtKB/TrEMBL