Slc36a3 (solute carrier family 36 member 3) - Rat Genome Database

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Gene: Slc36a3 (solute carrier family 36 member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Slc36a3
Name: solute carrier family 36 member 3
RGD ID: 12698964
Description: ENCODES a protein that exhibits amino acid:proton symporter activity (inferred); glycine transmembrane transporter activity (inferred); L-alanine transmembrane transporter activity (inferred); INVOLVED IN glycine transport (inferred); L-alanine transport (inferred); proline transmembrane transport (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); GM2 Gangliosidosis, AB variant (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proton-coupled amino acid transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,885,121 - 112,910,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651511,336,148 - 11,360,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651511,336,148 - 11,360,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc36a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,885,121 - 112,910,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651511,336,148 - 11,360,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651511,336,148 - 11,360,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC36A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385151,276,358 - 151,303,766 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5151,276,358 - 151,303,766 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,655,919 - 150,683,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,636,516 - 150,663,520 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,636,515 - 150,663,520NCBI
Celera5146,737,294 - 146,764,697 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,801,307 - 145,828,710 (-)NCBIHuRef
CHM1_15150,088,704 - 150,116,096 (-)NCBICHM1_1
T2T-CHM13v2.05151,815,323 - 151,842,709 (-)NCBIT2T-CHM13v2.0
Slc36a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,015,641 - 55,042,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,015,641 - 55,042,534 (-)EnsemblGRCm39 Ensembl
GRCm381155,124,815 - 55,151,722 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,124,815 - 55,151,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,938,325 - 54,965,208 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,968,246 - 54,995,129 (-)NCBIMGSCv36mm8
Celera1159,714,741 - 59,741,405 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
Slc36a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,744,226 - 39,774,120 (-)NCBIGRCr8
mRatBN7.21039,243,531 - 39,273,433 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1039,243,595 - 39,270,567 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,930,408 - 43,957,509 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,420,482 - 43,447,590 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,924,187 - 38,951,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,462,752 - 40,490,259 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,462,701 - 40,489,808 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,301,365 - 40,328,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,526,553 - 40,555,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11040,540,176 - 40,569,174 (-)NCBI
Celera1038,581,174 - 38,608,103 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc36a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,400,608 - 2,423,155 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,395,045 - 2,423,797 (+)NCBIChiLan1.0ChiLan1.0
SLC36A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,507,847 - 146,541,672 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,647,392 - 144,680,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,703,628 - 146,774,744 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,704,142 - 152,731,836 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,704,142 - 152,731,899 (-)Ensemblpanpan1.1panPan2
SLC36A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,963,429 - 58,013,993 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,933,453 - 57,992,587 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,782,466 - 57,830,408 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,404,134 - 58,452,088 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,374,921 - 58,431,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,221,803 - 58,269,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,320,238 - 58,368,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0458,824,060 - 58,872,011 (+)NCBIUU_Cfam_GSD_1.0
SLC36A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,689,245 - 71,731,418 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,689,211 - 71,732,634 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,931,076 - 77,964,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC36A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,834,331 - 53,861,412 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,834,653 - 53,860,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603423,852,437 - 23,878,843 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc36a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473341,163,478 - 41,193,533 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006876   ⟹   ENSSTOP00000006148
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651511,336,148 - 11,360,221 (+)Ensembl
RefSeq Acc Id: XM_040273256   ⟹   XP_040129190
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,885,121 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273257   ⟹   XP_040129191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,885,146 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273258   ⟹   XP_040129192
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,885,121 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273259   ⟹   XP_040129193
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,885,133 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273260   ⟹   XP_040129194
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,886,844 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273261   ⟹   XP_040129195
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,885,121 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273262   ⟹   XP_040129196
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,886,842 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273263   ⟹   XP_040129197
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,886,844 - 112,910,971 (+)NCBI
RefSeq Acc Id: XM_040273264   ⟹   XP_040129198
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,885,121 - 112,910,767 (+)NCBI
RefSeq Acc Id: XM_040273265   ⟹   XP_040129199
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213112,889,375 - 112,910,971 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040129190   ⟸   XM_040273256
- Peptide Label: isoform X1
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129195   ⟸   XM_040273261
- Peptide Label: isoform X3
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129192   ⟸   XM_040273258
- Peptide Label: isoform X1
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129198   ⟸   XM_040273264
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040129193   ⟸   XM_040273259
- Peptide Label: isoform X1
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129191   ⟸   XM_040273257
- Peptide Label: isoform X1
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129196   ⟸   XM_040273262
- Peptide Label: isoform X4
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129194   ⟸   XM_040273260
- Peptide Label: isoform X2
- UniProtKB: I3M8P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129197   ⟸   XM_040273263
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040129199   ⟸   XM_040273265
- Peptide Label: isoform X7
RefSeq Acc Id: ENSSTOP00000006148   ⟸   ENSSTOT00000006876
Protein Domains
Amino acid transporter transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006878 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006876.3 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
NCBI Gene Slc36a3 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  PROTON-COUPLED AMINO ACID TRANSPORTER 3 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt I3M8P6 ENTREZGENE, UniProtKB/TrEMBL