Ltbp3 (latent transforming growth factor beta binding protein 3) - Rat Genome Database

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Gene: Ltbp3 (latent transforming growth factor beta binding protein 3) Ictidomys tridecemlineatus
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Symbol: Ltbp3
Name: latent transforming growth factor beta binding protein 3
RGD ID: 12698013
Description: ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); bone remodeling (ortholog); lung saccule development (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); anodontia (ortholog); bone disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: latent-transforming growth factor beta-binding protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,460,548 - 7,476,122 (+)NCBI
SpeTri2.0NW_0049365993,902,903 - 3,918,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ltbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,460,548 - 7,476,122 (+)NCBI
SpeTri2.0NW_0049365993,902,903 - 3,918,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LTBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1165,538,559 - 65,558,930 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1165,538,805 - 65,558,930 (-)EnsemblGRCh38hg38GRCh38
GRCh381165,538,559 - 65,558,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371165,306,030 - 65,325,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,062,850 - 65,082,006 (-)NCBINCBI36hg18NCBI36
Build 341165,062,851 - 65,082,006NCBI
Celera1162,632,308 - 62,652,081 (-)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,633,038 - 61,652,692 (-)NCBIHuRef
CHM1_11165,189,927 - 65,209,594 (-)NCBICHM1_1
Ltbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,790,928 - 5,808,564 (+)NCBIGRCm39mm39
GRCm39 Ensembl195,790,932 - 5,808,560 (+)Ensembl
GRCm38195,740,900 - 5,758,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,740,904 - 5,758,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,740,904 - 5,758,532 (+)NCBIGRCm37mm9NCBIm37
MGSCv36195,742,127 - 5,758,525 (+)NCBImm8
Celera195,610,947 - 5,628,578 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Ltbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21203,029,412 - 203,045,975 (+)NCBI
Rnor_6.0 Ensembl1221,099,998 - 221,116,096 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01221,099,155 - 221,116,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01228,032,118 - 228,049,059 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,369,474 - 208,385,572 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11208,528,203 - 208,529,495 (+)NCBI
Celera1200,565,425 - 200,581,523 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ltbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,714,627 - 19,729,855 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,714,161 - 19,730,344 (+)NCBIChiLan1.0ChiLan1.0
LTBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11164,233,504 - 64,252,797 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,233,504 - 64,252,802 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01160,897,897 - 60,917,690 (-)NCBIMhudiblu_PPA_v0panPan3
LTBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,653,783 - 51,667,793 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,659,098 - 51,667,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,258,570 - 50,276,031 (+)NCBI
ROS_Cfam_1.01852,687,327 - 52,704,788 (+)NCBI
UMICH_Zoey_3.11851,787,223 - 51,804,683 (+)NCBI
UNSW_CanFamBas_1.01851,361,491 - 51,378,941 (+)NCBI
UU_Cfam_GSD_1.01852,151,640 - 52,169,092 (+)NCBI
LTBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,701,340 - 6,720,172 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,701,455 - 6,720,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,843,784 - 5,861,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LTBP3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,681,140 - 8,700,721 (+)NCBI
ChlSab1.1 Ensembl18,681,156 - 8,703,740 (+)Ensembl
Ltbp3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,845,949 - 20,861,169 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005333441   ⟹   XP_005333498
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,460,548 - 7,476,122 (+)NCBI
SpeTri2.0NW_0049365993,902,903 - 3,918,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005333442   ⟹   XP_005333499
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,460,548 - 7,476,122 (+)NCBI
SpeTri2.0NW_0049365993,902,903 - 3,918,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284130   ⟹   XP_040140064
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,460,554 - 7,476,122 (+)NCBI
RefSeq Acc Id: XM_040284131   ⟹   XP_040140065
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,460,554 - 7,476,122 (+)NCBI
RefSeq Acc Id: XM_040284132   ⟹   XP_040140066
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,460,554 - 7,476,122 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005333498   ⟸   XM_005333441
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005333499   ⟸   XM_005333442
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040140065   ⟸   XM_040284131
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040140064   ⟸   XM_040284130
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040140066   ⟸   XM_040284132
- Peptide Label: isoform X5
Protein Domains
EGF-like   TB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024436 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000018785 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024713 UniProtKB/TrEMBL
Gene3D-CATH 3.90.290.10 UniProtKB/TrEMBL
InterPro cEGF UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  TB_dom UniProtKB/TrEMBL
  TB_dom_sf UniProtKB/TrEMBL
NCBI Gene Ltbp3 ENTREZGENE
Pfam cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
  PF00683 UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  PS51364 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/TrEMBL
  SSF57581 UniProtKB/TrEMBL
UniProt I3N339_ICTTR UniProtKB/TrEMBL