Hnf1b (HNF1 homeobox B) - Rat Genome Database

Name: Hnf1b
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Hnf1b (HNF1 homeobox B) Ictidomys tridecemlineatus

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Symbol:

Hnf1b

Name:

HNF1 homeobox B

RGD ID:

12697983

Description:

ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Autosomal Dominant Tubulointerstitial Kidney Disease 2 (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hepatocyte nuclear factor 1-beta; HNF1 homeobox B, transcript variant X1; HNF1 homeobox B, transcript variant X2; HNF1 homeobox B, transcript variant X3; HNF1 homeobox B, transcript variant X4; HNF1 homeobox B, transcript variant X5

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HNF1B (HNF1 homeobox B)	NCBI	Ortholog
Mus musculus (house mouse):	Hnf1b (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hnf1b (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hnf1b (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HNF1B (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HNF1B (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HNF1B (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HNF1B (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hnf1b (HNF1 homeobox B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	36,371,915 - 36,425,499 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	649,546 - 702,672 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	649,551 - 702,448 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

Autosomal Dominant Tubulointerstitial Kidney Disease 2 (ISO)

CAKUT (ISO)

chromophobe renal cell carcinoma (ISO)

chromosome 17q12 deletion syndrome (ISO)

diabetes mellitus (ISO)

Familial Juvenile Hyperuricemic Nephropathy 3 (ISO)

genetic disease (ISO)

hyperphosphatasia with impaired intellectual development syndrome 5 (ISO)

kidney disease (ISO)

maturity-onset diabetes of the young (ISO)

maturity-onset diabetes of the young type 1 (ISO)

maturity-onset diabetes of the young type 5 (ISO)

Neurodevelopmental Disorders (ISO)

nonpapillary renal cell carcinoma (ISO)

ovarian cancer (ISO)

pancreas disease (ISO)

polycystic liver disease (ISO)

polycystic liver disease 1 (ISO)

Prostatic Neoplasms (ISO)

renal cell carcinoma (ISO)

schizophrenia (ISO)

type 2 diabetes mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ development (IEA)

anterior/posterior pattern specification (IEA,ISO)

apoptotic process (IEA,ISO)

branching morphogenesis of an epithelial tube (IEA,ISO)

circadian regulation of gene expression (ISO)

embryonic digestive tract morphogenesis (IEA,ISO)

embryonic morphogenesis (ISO)

endocrine pancreas development (ISO)

endoderm development (IEA,ISO)

endodermal cell fate specification (IEA,ISO)

epithelial cell proliferation (IEA,ISO)

epithelium development (IEA,ISO)

genitalia development (ISO)

hepatoblast differentiation (IEA,ISO)

hepatocyte differentiation (ISO)

hindbrain development (IEA,ISO)

inner cell mass cell differentiation (IEA,ISO)

insulin secretion (IEA,ISO)

kidney development (IEA,ISO)

kidney morphogenesis (IEA,ISO)

liver development (IEA,ISO)

mesenchymal cell apoptotic process involved in metanephros development (IEA,ISO)

mesonephric duct development (IEA,ISO)

mesonephric duct formation (IEA,ISO)

mesonephric tubule development (IEA,ISO)

negative regulation of apoptotic process (IEA,ISO)

negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis (IEA,ISO)

negative regulation of mesenchymal cell apoptotic process involved in metanephros development (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

nephric duct development (IEA,ISO)

nephric duct formation (IEA,ISO)

Notch signaling pathway (IEA,ISO)

pancreas development (IEA)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of gene expression (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of transcription initiation by RNA polymerase II (IEA)

pronephric nephron tubule development (IEA)

pronephros development (IEA)

protein-DNA complex assembly (ISO)

regulation of branch elongation involved in ureteric bud branching (IEA,ISO)

regulation of pronephros size (IEA)

regulation of transcription by RNA polymerase II (IEA)

regulation of Wnt signaling pathway (IEA,ISO)

response to biphenyl (ISO)

response to carbohydrate (ISO)

response to glucose (IEA,ISO)

response to xenobiotic stimulus (ISO)

system development (IEA)

ureteric bud elongation (IEA,ISO)

Cellular Component

intracellular membrane-bounded organelle (IEA)

nucleoplasm (IEA)

nucleus (IEA)

transcription regulator complex (IEA)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IEA,ISO)

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA,ISO)

identical protein binding (IEA,ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

protein-containing complex binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (ISO)

transcription cis-regulatory region binding (IEA)

transcription coregulator binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

forkhead class A signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Hnf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	36,371,915 - 36,425,499 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	649,546 - 702,672 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	649,551 - 702,448 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNF1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	37,686,431 - 37,745,059 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	37,686,431 - 37,745,059 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	36,046,434 - 36,105,050 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	33,120,547 - 33,179,209 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	33,162,728 - 33,179,182	NCBI
Celera	17	32,869,487 - 32,928,989 (-)	NCBI		Celera
Cytogenetic Map	17	q12	ENTREZGENE
HuRef	17	31,984,120 - 32,042,660 (-)	NCBI		HuRef
CHM1_1	17	36,077,994 - 36,136,668 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	38,673,401 - 38,732,032 (-)	NCBI		T2T-CHM13v2.0

Hnf1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	83,741,035 - 83,796,743 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	83,740,889 - 83,796,645 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	83,850,209 - 83,905,917 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	83,850,063 - 83,905,819 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	83,664,371 - 83,719,317 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	83,667,244 - 83,721,542 (+)	NCBI		MGSCv36	mm8
Celera	11	93,455,173 - 93,510,691 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.23	NCBI

Hnf1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	69,233,377 - 69,287,360 (+)	NCBI		GRCr8
mRatBN7.2	10	68,735,894 - 68,789,888 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	68,735,894 - 68,789,888 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	73,355,884 - 73,409,885 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	72,860,897 - 72,914,896 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	68,325,325 - 68,379,318 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	71,159,863 - 71,218,902 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	71,159,869 - 71,218,902 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	70,778,492 - 70,829,745 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	72,081,091 - 72,187,014 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	72,095,460 - 72,201,382 (+)	NCBI
Celera	10	67,668,848 - 67,719,403 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Hnf1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	320,283 - 371,420 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	320,283 - 371,420 (+)	NCBI	ChiLan1.0	ChiLan1.0

HNF1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	27,010,609 - 27,069,149 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	28,894,053 - 28,952,591 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	19,333,485 - 19,392,147 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	19,633,424 - 19,691,863 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	19,633,424 - 19,691,863 (+)	Ensembl	panpan1.1		panPan2

HNF1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	37,437,992 - 37,493,200 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	37,438,583 - 37,492,993 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	36,661,511 - 36,717,034 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	38,248,175 - 38,303,484 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	38,248,763 - 38,303,129 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	37,029,129 - 37,084,643 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	37,316,583 - 37,372,144 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	37,403,808 - 37,459,176 (-)	NCBI		UU_Cfam_GSD_1.0

HNF1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	39,143,121 - 39,201,631 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	39,143,119 - 39,201,631 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	40,788,316 - 40,846,557 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNF1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	30,033,486 - 30,097,106 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	30,036,766 - 30,097,088 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	760,378 - 820,920 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnf1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	4,661,669 - 4,712,960 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	4,662,104 - 4,713,125 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012442 ⟹ ENSSTOP00000011150

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	649,546 - 702,672 (+)	Ensembl

RefSeq Acc Id:

XM_005321506 ⟹ XP_005321563

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	36,371,915 - 36,425,324 (-)	NCBI
SpeTri2.0	NW_004936490	649,726 - 702,252 (+)	NCBI

Sequence:

show sequence

ATGGTGTCCAAGCTCACATCGCTCCAGCAAGAACTCCTGAACGCCCTGCTGAGCTCCGGGGTCA
CCAAGGAGGTGCTGATCCAGGCCTTGGAGGAGTTGCTGCCATCTCCGAGCTTTGGGGTGAAACT
GGAGACGTTGCCCCTGTCCCCTGGAAGCGGGACAGATCCCGACACCAAGCCGGTCTTCCATACC
CTCACCAACGGTCACACCAAGGGCCGCTTGTCCGGGGACGAGGGCTCCGAAGACGGTGACGACT
ATGACACCCCTCCCATCCTTAAGGAGCTGCAGGCTCTCAACACCGAGGAAGCCGCGGAGCAGCG
GGCGGAGGTGGACCGAATGCTCAGTGAGGACCCTTGGAGGGCTGCCAAAATGATCAAAGGCTAC
ATGCAGCAACACAACATCCCCCAGAGGGAAGTGGTTGACGTCACCGGTCTGAACCAATCACACC
TCTCTCAGCACCTCAACAAGGGCACCCCTATGAAGACCCAGAAGCGTGCCGCCCTGTATACCTG
GTACGTCAGGAAGCAACGGGAGATCCTCCGACAGTTCAACCAGGCAGTCCAGAGCTCTGGAAAT
ATGACAGACAAAAGCAGTCAGGATCAGCTGCTGTTTCTCTTTCCAGAGTTCAGTCAACAGAGCC
AGGGGCCTGGGCAGTCCGACGACGCCTGCTCTGAGCCCACCAACAAGAAGATGCGACGCAACCG
GTTCAAATGGGGGCCCGCGTCCCAGCAAATCTTGTACCAGGCCTACGACCGGCAAAAGAACCCC
AGCAAGGAAGAGAGGGAGGCCTTAGTGGAGGAGTGCAACAGGGCAGAATGTTTGCAGCGAGGCG
TATCCCCCTCTAAAGCCCATGGCCTGGGCTCCAACTTGGTCACTGAGGTCCGTGTCTACAACTG
GTTTGCAAACCGTAGGAAGGAGGAGGCATTCCGGCAGAAGCTGGCCATGGATGCCTATAGCTCC
AACCAGACGCACAGCCTGAACCCCCTGCTCACGCACAGCTCCCCCCACCACCAGCCCAGCACGT
CTCCTCCAAACAAGCTGCCAGGAGTACGCTACAGCCAGCAGGGAAGCAATGAGGTCACTTCCTC
TTCAACAATCAGTCACCATGGCAACAGTGCCATGGTGACCAGCCAGTCAGTTTTACAGCAAGTC
TCCCCAGCCAGCCTGGACCCCGGCCACAATCTCCTCTCACCTGATGGTAAAATGCAGATAGCAG
TCTCAGGAGGAGGTTTGCCCCCGGTCAGCACCTTGACGAACATCCACAGCCTGTCCCACCACAA
TCCCCAGCAATCTCAAAACCTCATCATGACCCCACTGTCCGGAGTCATGGCCATTGCACAAAGC
CTCAACACCTCCCAAGCACAGAGCGTCCCAGTCATCAACAGTGTGGCCAGCAGCCTGGCAGCCC
TGCAGCCCGTCCAGTTCTCCCAGCAGCTGCACAGCCCTCACCAGCAGCCCCTCATGCAGCAGAG
CCCCGGCAGCCACATGGCCCAGCAACCTTTCATGGCTGCTGTGACTCAGCTGCAGAACTCACAC
ATGTATGCACACAAGCAGGAGCCCCCCCAGTATTCCCACACCTCCCGGTTTCCATCTGCGATGG
TGGTCACAGACACCAGCAGCATCAGTACACTCACCAACATGTCTTCCAGTAAACAGTGTCCACT
GCAAGCCTGGTGA

hide sequence

RefSeq Acc Id:

XM_005321507 ⟹ XP_005321564

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	36,372,721 - 36,425,499 (-)	NCBI
SpeTri2.0	NW_004936490	649,551 - 702,329 (+)	NCBI

Sequence:

show sequence

AGAAGTTTTCTGACTCCTCTCAGAGGAGACTCCCGGACCCCGGGGGAGTAACAGGTGTCTGGAG
GCTGAAGGGTGGAGGGGTTCCAGAACTTGGGGCTTGCTGGTGGAACTCCCCTCCACCCTCCTCA
CTTGCACCCACCCACCCCCTAACCCCCTTCTTTTCCGTCCTTGGAAAATGGTGTCCAAGCTCAC
ATCGCTCCAGCAAGAACTCCTGAACGCCCTGCTGAGCTCCGGGGTCACCAAGGAGGTGCTGATC
CAGGCCTTGGAGGAGTTGCTGCCATCTCCGAGCTTTGGGGTGAAACTGGAGACGTTGCCCCTGT
CCCCTGGAAGCGGGACAGATCCCGACACCAAGCCGGTCTTCCATACCCTCACCAACGGTCACAC
CAAGGGCCGCTTGTCCGGGGACGAGGGCTCCGAAGACGGTGACGACTATGACACCCCTCCCATC
CTTAAGGAGCTGCAGGCTCTCAACACCGAGGAAGCCGCGGAGCAGCGGGCGGAGGTGGACCGAA
TGCTCAGTGAGGACCCTTGGAGGGCTGCCAAAATGATCAAAGGCTACATGCAGCAACACAACAT
CCCCCAGAGGGAAGTGGTTGACGTCACCGGTCTGAACCAATCACACCTCTCTCAGCACCTCAAC
AAGGGCACCCCTATGAAGACCCAGAAGCGTGCCGCCCTGTATACCTGGTACGTCAGGAAGCAAC
GGGAGATCCTCCGACAGTTCAACCAGGCAGTCCAGAGCTCTGGAAATATGACAGACAAAAGCAG
TCAGGATCAGCTGCTGTTTCTCTTTCCAGAGTTCAGTCAACAGAGCCAGGGGCCTGGGCAGTCC
GACGACGCCTGCTCTGAGCCCACCAACAAGAAGATGCGACGCAACCGGTTCAAATGGGGGCCCG
CGTCCCAGCAAATCTTGTACCAGGCCTACGACCGGCAAAAGAACCCCAGCAAGGAAGAGAGGGA
GGCCTTAGTGGAGGAGTGCAACAGGGCAGAATGTTTGCAGCGAGGCGTATCCCCCTCTAAAGCC
CATGGCCTGGGCTCCAACTTGGTCACTGAGGTCCGTGTCTACAACTGGTTTGCAAACCGTAGGA
AGGAGGAGGCATTCCGGCAGAAGCTGGCCATGGATGCCTATAGCTCCAACCAGACGCACAGCCT
GAACCCCCTGCTCACGCACAGCTCCCCCCACCACCAGCCCAGCACGTCTCCTCCAAACAAGCTG
CCAGGAGTACGCTACAGCCAGCAGGGAAGCAATGAGGTCACTTCCTCTTCAACAATCAGTCACC
ATGGCAACAGTGCCATGGTGACCAGCCAGTCAGTTTTACAGCAAGTCTCCCCAGCCAGCCTGGA
CCCCGGCCACAATCTCCTCTCACCTGATGGTAAAATGATAGCAGTCTCAGGAGGAGGTTTGCCC
CCGGTCAGCACCTTGACGAACATCCACAGCCTGTCCCACCACAATCCCCAGCAATCTCAAAACC
TCATCATGACCCCACTGTCCGGAGTCATGGCCATTGCACAAAGCCTCAACACCTCCCAAGCACA
GAGCGTCCCAGTCATCAACAGTGTGGCCAGCAGCCTGGCAGCCCTGCAGCCCGTCCAGTTCTCC
CAGCAGCTGCACAGCCCTCACCAGCAGCCCCTCATGCAGCAGAGCCCCGGCAGCCACATGGCCC
AGCAACCTTTCATGGCTGCTGTGACTCAGCTGCAGAACTCACACATGTATGCACACAAGCAGGA
GCCCCCCCAGTATTCCCACACCTCCCGGTTTCCATCTGCGATGGTGGTCACAGACACCAGCAGC
ATCAGTACACTCACCAACATGTCTTCCAGTAAACAGTGTCCACTGCAAGCCTGGTGATGCCCAC
CTATCACTTACTTGGTGCACAGCAACAAGGACTCTGTTTTCTACACCGTCACCCTTTGGGCAGC
TGTCAT

hide sequence

RefSeq Acc Id:

XM_005321508 ⟹ XP_005321565

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	36,372,798 - 36,425,324 (-)	NCBI
SpeTri2.0	NW_004936490	649,726 - 702,252 (+)	NCBI

Sequence:

show sequence

ATGGTGTCCAAGCTCACATCGCTCCAGCAAGAACTCCTGAACGCCCTGCTGAGCTCCGGGGTCA
CCAAGGAGGTGCTGATCCAGGCCTTGGAGGAGTTGCTGCCATCTCCGAGCTTTGGGGTGAAACT
GGAGACGTTGCCCCTGTCCCCTGGAAGCGGGACAGATCCCGACACCAAGCCGGTCTTCCATACC
CTCACCAACGGTCACACCAAGGGCCGCTTGTCCGGGGACGAGGGCTCCGAAGACGGTGACGACT
ATGACACCCCTCCCATCCTTAAGGAGCTGCAGGCTCTCAACACCGAGGAAGCCGCGGAGCAGCG
GGCGGAGGTGGACCGAATGCTCAGTGAGGACCCTTGGAGGGCTGCCAAAATGATCAAAGGCTAC
ATGCAGCAACACAACATCCCCCAGAGGGAAGTGGTTGACGTCACCGGTCTGAACCAATCACACC
TCTCTCAGCACCTCAACAAGGGCACCCCTATGAAGACCCAGAAGCGTGCCGCCCTGTATACCTG
GTACGTCAGGAAGCAACGGGAGATCCTCCGACAGTTCAGTCAACAGAGCCAGGGGCCTGGGCAG
TCCGACGACGCCTGCTCTGAGCCCACCAACAAGAAGATGCGACGCAACCGGTTCAAATGGGGGC
CCGCGTCCCAGCAAATCTTGTACCAGGCCTACGACCGGCAAAAGAACCCCAGCAAGGAAGAGAG
GGAGGCCTTAGTGGAGGAGTGCAACAGGGCAGAATGTTTGCAGCGAGGCGTATCCCCCTCTAAA
GCCCATGGCCTGGGCTCCAACTTGGTCACTGAGGTCCGTGTCTACAACTGGTTTGCAAACCGTA
GGAAGGAGGAGGCATTCCGGCAGAAGCTGGCCATGGATGCCTATAGCTCCAACCAGACGCACAG
CCTGAACCCCCTGCTCACGCACAGCTCCCCCCACCACCAGCCCAGCACGTCTCCTCCAAACAAG
CTGCCAGGAGTACGCTACAGCCAGCAGGGAAGCAATGAGGTCACTTCCTCTTCAACAATCAGTC
ACCATGGCAACAGTGCCATGGTGACCAGCCAGTCAGTTTTACAGCAAGTCTCCCCAGCCAGCCT
GGACCCCGGCCACAATCTCCTCTCACCTGATGGTAAAATGCAGATAGCAGTCTCAGGAGGAGGT
TTGCCCCCGGTCAGCACCTTGACGAACATCCACAGCCTGTCCCACCACAATCCCCAGCAATCTC
AAAACCTCATCATGACCCCACTGTCCGGAGTCATGGCCATTGCACAAAGCCTCAACACCTCCCA
AGCACAGAGCGTCCCAGTCATCAACAGTGTGGCCAGCAGCCTGGCAGCCCTGCAGCCCGTCCAG
TTCTCCCAGCAGCTGCACAGCCCTCACCAGCAGCCCCTCATGCAGCAGAGCCCCGGCAGCCACA
TGGCCCAGCAACCTTTCATGGCTGCTGTGACTCAGCTGCAGAACTCACACATGTATGCACACAA
GCAGGAGCCCCCCCAGTATTCCCACACCTCCCGGTTTCCATCTGCGATGGTGGTCACAGACACC
AGCAGCATCAGTACACTCACCAACATGTCTTCCAGTAAACAGTGTCCACTGCAAGCCTGGTGA

hide sequence

RefSeq Acc Id:

XM_005321509 ⟹ XP_005321566

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	36,372,602 - 36,425,499 (-)	NCBI
SpeTri2.0	NW_004936490	649,551 - 702,448 (+)	NCBI

Sequence:

show sequence

AGAAGTTTTCTGACTCCTCTCAGAGGAGACTCCCGGACCCCGGGGGAGTAACAGGTGTCTGGAG
GCTGAAGGGTGGAGGGGTTCCAGAACTTGGGGCTTGCTGGTGGAACTCCCCTCCACCCTCCTCA
CTTGCACCCACCCACCCCCTAACCCCCTTCTTTTCCGTCCTTGGAAAATGGTGTCCAAGCTCAC
ATCGCTCCAGCAAGAACTCCTGAACGCCCTGCTGAGCTCCGGGGTCACCAAGGAGGTGCTGATC
CAGGCCTTGGAGGAGTTGCTGCCATCTCCGAGCTTTGGGGTGAAACTGGAGACGTTGCCCCTGT
CCCCTGGAAGCGGGACAGATCCCGACACCAAGCCGGTCTTCCATACCCTCACCAACGGTCACAC
CAAGGGCCGCTTGTCCGGGGACGAGGGCTCCGAAGACGGTGACGACTATGACACCCCTCCCATC
CTTAAGGAGCTGCAGGCTCTCAACACCGAGGAAGCCGCGGAGCAGCGGGCGGAGGTGGACCGAA
TGCTCAGTGAGGACCCTTGGAGGGCTGCCAAAATGATCAAAGGCTACATGCAGCAACACAACAT
CCCCCAGAGGGAAGTGGTTGACGTCACCGGTCTGAACCAATCACACCTCTCTCAGCACCTCAAC
AAGGGCACCCCTATGAAGACCCAGAAGCGTGCCGCCCTGTATACCTGGTACGTCAGGAAGCAAC
GGGAGATCCTCCGACAGTTCAGTCAACAGAGCCAGGGGCCTGGGCAGTCCGACGACGCCTGCTC
TGAGCCCACCAACAAGAAGATGCGACGCAACCGGTTCAAATGGGGGCCCGCGTCCCAGCAAATC
TTGTACCAGGCCTACGACCGGCAAAAGAACCCCAGCAAGGAAGAGAGGGAGGCCTTAGTGGAGG
AGTGCAACAGGGCAGAATGTTTGCAGCGAGGCGTATCCCCCTCTAAAGCCCATGGCCTGGGCTC
CAACTTGGTCACTGAGGTCCGTGTCTACAACTGGTTTGCAAACCGTAGGAAGGAGGAGGCATTC
CGGCAGAAGCTGGCCATGGATGCCTATAGCTCCAACCAGACGCACAGCCTGAACCCCCTGCTCA
CGCACAGCTCCCCCCACCACCAGCCCAGCACGTCTCCTCCAAACAAGCTGCCAGGAGTACGCTA
CAGCCAGCAGGGAAGCAATGAGGTCACTTCCTCTTCAACAATCAGTCACCATGGCAACAGTGCC
ATGGTGACCAGCCAGTCAGTTTTACAGCAAGTCTCCCCAGCCAGCCTGGACCCCGGCCACAATC
TCCTCTCACCTGATGGTAAAATGATAGCAGTCTCAGGAGGAGGTTTGCCCCCGGTCAGCACCTT
GACGAACATCCACAGCCTGTCCCACCACAATCCCCAGCAATCTCAAAACCTCATCATGACCCCA
CTGTCCGGAGTCATGGCCATTGCACAAAGCCTCAACACCTCCCAAGCACAGAGCGTCCCAGTCA
TCAACAGTGTGGCCAGCAGCCTGGCAGCCCTGCAGCCCGTCCAGTTCTCCCAGCAGCTGCACAG
CCCTCACCAGCAGCCCCTCATGCAGCAGAGCCCCGGCAGCCACATGGCCCAGCAACCTTTCATG
GCTGCTGTGACTCAGCTGCAGAACTCACACATGTATGCACACAAGCAGGAGCCCCCCCAGTATT
CCCACACCTCCCGGTTTCCATCTGCGATGGTGGTCACAGACACCAGCAGCATCAGTACACTCAC
CAACATGTCTTCCAGTAAACAGTGTCCACTGCAAGCCTGGTGATGCCCACCTATCACTTACTTG
GTGCACAGCAACAAGGACTCTGTTTTCTACACCGTCACCCTTTGGGCAGCTGTCATGGAAAAGC
CCAGTGACCTGACAAGCACCTGTGAGAGGTCCCTGCTTAGCTGACATCCTGCTGGCACCTCAGA
CAATCCGCTCTCGGGAGGCGCAGCCTGAAGCCCAGCTTCCCTTCTAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005321563	(Get FASTA)	NCBI Sequence Viewer
	XP_005321564	(Get FASTA)	NCBI Sequence Viewer
	XP_005321565	(Get FASTA)	NCBI Sequence Viewer
	XP_005321566	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011150.3
GenBank Protein	KAG3269453	(Get FASTA)	NCBI Sequence Viewer
	KAG3269454	(Get FASTA)	NCBI Sequence Viewer
	KAG3269455	(Get FASTA)	NCBI Sequence Viewer
	KAG3269456	(Get FASTA)	NCBI Sequence Viewer
	KAG3269457	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321563 ⟸ XM_005321506
- Peptide Label:	isoform X1
- UniProtKB:	I3MJ59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVSKLTSLQQELLNALLSSGVTKEVLIQALEELLPSPSFGVKLETLPLSPGSGTDPDTKPVFHT LTNGHTKGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWRAAKMIKGY MQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFNQAVQSSGN MTDKSSQDQLLFLFPEFSQQSQGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNP SKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSS NQTHSLNPLLTHSSPHHQPSTSPPNKLPGVRYSQQGSNEVTSSSTISHHGNSAMVTSQSVLQQV SPASLDPGHNLLSPDGKMQIAVSGGGLPPVSTLTNIHSLSHHNPQQSQNLIMTPLSGVMAIAQS LNTSQAQSVPVINSVASSLAALQPVQFSQQLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSH MYAHKQEPPQYSHTSRFPSAMVVTDTSSISTLTNMSSSKQCPLQAW hide sequence

RefSeq Acc Id:

XP_005321565 ⟸ XM_005321508

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVSKLTSLQQELLNALLSSGVTKEVLIQALEELLPSPSFGVKLETLPLSPGSGTDPDTKPVFHT
LTNGHTKGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWRAAKMIKGY
MQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFSQQSQGPGQ
SDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSK
AHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSNQTHSLNPLLTHSSPHHQPSTSPPNK
LPGVRYSQQGSNEVTSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHNLLSPDGKMQIAVSGGG
LPPVSTLTNIHSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQSVPVINSVASSLAALQPVQ
FSQQLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVVTDT
SSISTLTNMSSSKQCPLQAW

hide sequence

RefSeq Acc Id:

XP_005321564 ⟸ XM_005321507

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVSKLTSLQQELLNALLSSGVTKEVLIQALEELLPSPSFGVKLETLPLSPGSGTDPDTKPVFHT
LTNGHTKGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWRAAKMIKGY
MQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFNQAVQSSGN
MTDKSSQDQLLFLFPEFSQQSQGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNP
SKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSS
NQTHSLNPLLTHSSPHHQPSTSPPNKLPGVRYSQQGSNEVTSSSTISHHGNSAMVTSQSVLQQV
SPASLDPGHNLLSPDGKMIAVSGGGLPPVSTLTNIHSLSHHNPQQSQNLIMTPLSGVMAIAQSL
NTSQAQSVPVINSVASSLAALQPVQFSQQLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHM
YAHKQEPPQYSHTSRFPSAMVVTDTSSISTLTNMSSSKQCPLQAW

hide sequence

RefSeq Acc Id:

XP_005321566 ⟸ XM_005321509

- Peptide Label:

isoform X4

- Sequence:

show sequence

MVSKLTSLQQELLNALLSSGVTKEVLIQALEELLPSPSFGVKLETLPLSPGSGTDPDTKPVFHT
LTNGHTKGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWRAAKMIKGY
MQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFSQQSQGPGQ
SDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSK
AHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSNQTHSLNPLLTHSSPHHQPSTSPPNK
LPGVRYSQQGSNEVTSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHNLLSPDGKMIAVSGGGL
PPVSTLTNIHSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQSVPVINSVASSLAALQPVQF
SQQLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVVTDTS
SISTLTNMSSSKQCPLQAW

hide sequence

Ensembl Acc Id:

ENSSTOP00000011150 ⟸ ENSSTOT00000012442

Protein Domains

HNF-p1 Homeobox POU-specific atypical

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012440	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012442.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.260.40	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	HNF-1	UniProtKB/TrEMBL
	HNF-1_N	UniProtKB/TrEMBL
	HNF-1_POU	UniProtKB/TrEMBL
	HNF1_dimer_N_dom_sf	UniProtKB/TrEMBL
	HNF1b_C	UniProtKB/TrEMBL
	HNF_P1	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Lambda_DNA-bd_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Hnf1b	ENTREZGENE
PANTHER	HEPATOCYTE NUCLEAR FACTOR 1-BETA	UniProtKB/TrEMBL
	PTHR11568	UniProtKB/TrEMBL
Pfam	HNF-1_N	UniProtKB/TrEMBL
	HNF-1B_C	UniProtKB/TrEMBL
PROSITE	HNF_P1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	POU_4	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF100957	UniProtKB/TrEMBL
	SSF46689	UniProtKB/TrEMBL
	SSF47413	UniProtKB/TrEMBL
UniProt	I3MJ59	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Annotations - PID (archival)