Cebpd (CCAAT enhancer binding protein delta) - Rat Genome Database

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Gene: Cebpd (CCAAT enhancer binding protein delta) Ictidomys tridecemlineatus
Analyze
Symbol: Cebpd
Name: CCAAT enhancer binding protein delta
RGD ID: 12697124
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN fat cell differentiation (ortholog); hematopoietic progenitor cell differentiation (ortholog); inner ear development (ortholog); PARTICIPATES IN forkhead class A signaling pathway; interleukin-6 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCAAT/enhancer binding protein delta; CCAAT/enhancer-binding protein delta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530379,729,245 - 79,730,813 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365904,919,862 - 4,920,612 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cebpd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530379,729,245 - 79,730,813 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365904,919,862 - 4,920,612 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38847,736,913 - 47,738,164 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl847,736,913 - 47,738,164 (-)EnsemblGRCh38hg38GRCh38
GRCh37848,649,475 - 48,650,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36848,812,029 - 48,813,279 (-)NCBINCBI36Build 36hg18NCBI36
Build 34848,812,028 - 48,813,323NCBI
Celera844,634,626 - 44,635,876 (-)NCBICelera
Cytogenetic Map8q11.21NCBI
HuRef844,112,391 - 44,113,009 (-)NCBIHuRef
CHM1_1848,701,363 - 48,702,613 (-)NCBICHM1_1
T2T-CHM13v2.0848,112,630 - 48,113,881 (-)NCBIT2T-CHM13v2.0
Cebpd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391615,705,150 - 15,707,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1615,705,150 - 15,708,895 (+)EnsemblGRCm39 Ensembl
GRCm381615,887,286 - 15,889,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1615,887,286 - 15,891,031 (+)EnsemblGRCm38mm10GRCm38
MGSCv371615,887,379 - 15,889,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361615,800,864 - 15,803,123 (+)NCBIMGSCv36mm8
Celera1616,458,567 - 16,460,826 (+)NCBICelera
Cytogenetic Map16A2NCBI
cM Map1610.09NCBI
Cebpd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81198,268,856 - 98,269,994 (+)NCBIGRCr8
mRatBN7.21184,764,670 - 84,765,808 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1184,764,565 - 84,765,829 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1193,496,641 - 93,497,779 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01186,157,792 - 86,158,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01185,211,385 - 85,212,523 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01189,008,008 - 89,009,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1189,008,008 - 89,009,146 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01192,069,758 - 92,070,896 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1183,507,971 - 83,509,109 (+)NCBICelera
Cytogenetic Map11q23NCBI
Cebpd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554547,711,010 - 7,711,680 (-)NCBIChiLan1.0ChiLan1.0
CEBPD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2763,372,971 - 63,374,178 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1839,066,730 - 39,068,023 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0844,167,256 - 44,168,545 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CEBPD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13574,994 - 77,816 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3588,087 - 89,238 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,897 - 27,048 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13510,912 - 12,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03529,258 - 30,409 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0351,364,455 - 1,365,597 (+)NCBIUU_Cfam_GSD_1.0
CEBPD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl479,872,939 - 79,874,477 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1479,872,863 - 79,874,481 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2487,368,896 - 87,370,587 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1843,873,075 - 43,874,375 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603998,196,146 - 98,197,762 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cebpd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247357,721,633 - 7,722,445 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247357,721,564 - 7,722,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005332332   ⟹   XP_005332389
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530379,729,245 - 79,730,813 (+)NCBI
SpeTri2.0NW_0049365904,919,862 - 4,920,612 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332389 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3274195 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005332389   ⟸   XM_005332332
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Cebpd ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-27 Cebpd  CCAAT enhancer binding protein delta    CCAAT/enhancer binding protein delta  Symbol and/or name change 5135510 APPROVED