Znf341 (zinc finger protein 341) - Rat Genome Database

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Gene: Znf341 (zinc finger protein 341) Ictidomys tridecemlineatus
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Symbol: Znf341
Name: zinc finger protein 341
RGD ID: 12696919
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); ASSOCIATED WITH hyper IgE recurrent infection syndrome 3 (ortholog); long QT syndrome (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,894,730 - 171,933,200 (+)NCBI
SpeTri2.0NW_0049365616,816,349 - 6,851,609 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Znf341
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,894,730 - 171,933,200 (+)NCBI
SpeTri2.0NW_0049365616,816,349 - 6,851,609 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF341
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2033,731,657 - 33,792,269 (+)EnsemblGRCh38hg38GRCh38
GRCh382033,731,657 - 33,792,269 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372032,319,802 - 32,380,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,783,469 - 31,843,736 (+)NCBINCBI36hg18NCBI36
Build 342031,783,468 - 31,843,736NCBI
Celera2029,072,525 - 29,132,795 (+)NCBI
Cytogenetic Map20q11.22NCBI
HuRef2029,105,231 - 29,164,875 (+)NCBIHuRef
CHM1_12032,220,946 - 32,281,398 (+)NCBICHM1_1
Zfp341
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,453,736 - 154,488,741 (+)NCBIGRCm39mm39
GRCm39 Ensembl2154,455,217 - 154,488,741 (+)Ensembl
GRCm382154,611,816 - 154,646,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,613,297 - 154,646,821 (+)EnsemblGRCm38mm10GRCm38
MGSCv372154,439,104 - 154,472,553 (+)NCBIGRCm37mm9NCBIm37
MGSCv362154,304,809 - 154,338,258 (+)NCBImm8
MGSCv362155,440,850 - 155,474,283 (+)NCBImm8
Celera2160,541,217 - 160,566,229 (+)NCBICelera
Cytogenetic Map2H1NCBI
Zfp341
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23143,122,699 - 143,156,250 (+)NCBI
Rnor_6.03150,114,853 - 150,172,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03156,511,320 - 156,544,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,086,839 - 145,105,846 (+)NCBIRGSC3.4rn4RGSC3.4
Celera3141,855,266 - 141,888,862 (+)NCBICelera
Cytogenetic Map3q41NCBI
Znf341
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,537,917 - 27,583,711 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542227,537,293 - 27,583,713 (-)NCBIChiLan1.0ChiLan1.0
ZNF341
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12031,166,374 - 31,218,282 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,164,597 - 31,218,282 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02030,018,348 - 30,079,721 (+)NCBIMhudiblu_PPA_v0panPan3
ZNF341
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,937,990 - 22,984,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,938,093 - 22,982,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,583,240 - 22,629,894 (+)NCBI
ROS_Cfam_1.02423,624,867 - 23,671,552 (+)NCBI
UMICH_Zoey_3.12422,917,225 - 22,963,979 (+)NCBI
UNSW_CanFamBas_1.02423,010,745 - 23,057,362 (+)NCBI
UU_Cfam_GSD_1.02423,441,838 - 23,462,455 (+)NCBI
UU_Cfam_GSD_1.02423,488,954 - 23,494,847 (+)NCBI
ZNF341
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,224,029 - 37,280,118 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11737,223,959 - 37,272,263 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,186,197 - 42,200,711 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF341
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1238,020,915 - 38,081,559 (+)NCBI
ChlSab1.1 Ensembl238,028,765 - 38,080,814 (+)Ensembl
Znf341
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248425,518,327 - 5,565,661 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013360528   ⟹   XP_013215982
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640171,898,139 - 171,933,200 (+)NCBI
SpeTri2.0NW_0049365616,816,349 - 6,851,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729580   ⟹   XP_021585255
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640171,894,731 - 171,933,200 (+)NCBI
SpeTri2.0NW_0049365616,816,349 - 6,851,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040274759   ⟹   XP_040130693
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640171,894,730 - 171,933,200 (+)NCBI
RefSeq Acc Id: XM_040274760   ⟹   XP_040130694
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640171,900,400 - 171,933,200 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013215982 (Get FASTA)   NCBI Sequence Viewer  
  XP_021585255 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130693 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130694 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013215982   ⟸   XM_013360528
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021585255   ⟸   XM_021729580
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040130693   ⟸   XM_040274759
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040130694   ⟸   XM_040274760
- Peptide Label: isoform X3
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002753 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000002465 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002757 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf341 ENTREZGENE
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3M119_ICTTR UniProtKB/TrEMBL