Chmp3 (charged multivesicular body protein 3) - Rat Genome Database

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Gene: Chmp3 (charged multivesicular body protein 3) Ictidomys tridecemlineatus
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Symbol: Chmp3
Name: charged multivesicular body protein 3
RGD ID: 12695381
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylcholine binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); endosome to lysosome transport (ortholog); PARTICIPATES IN autophagy pathway; FOUND IN amphisome membrane (ortholog); autophagosome membrane (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,813,720 - 79,834,454 (-)NCBI
SpeTri2.0NW_0049367121,023,994 - 1,044,727 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Chmp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,813,720 - 79,834,454 (-)NCBI
SpeTri2.0NW_0049367121,023,994 - 1,044,727 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl286,503,430 - 86,563,479 (-)EnsemblGRCh38hg38GRCh38
GRCh38286,503,430 - 86,563,443 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37286,730,553 - 86,790,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36286,584,064 - 86,644,111 (-)NCBINCBI36hg18NCBI36
Build 34286,642,210 - 86,702,258NCBI
Celera286,558,596 - 86,618,513 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef286,628,305 - 86,688,178 (-)NCBIHuRef
CHM1_1286,660,612 - 86,720,561 (-)NCBICHM1_1
Chmp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,520,820 - 71,559,593 (+)NCBIGRCm39mm39
GRCm39 Ensembl671,520,781 - 71,559,593 (+)Ensembl
GRCm38671,543,831 - 71,582,609 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,543,797 - 71,582,609 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,493,848 - 71,531,568 (+)NCBIGRCm37mm9NCBIm37
MGSCv36671,473,363 - 71,511,083 (+)NCBImm8
Celera673,623,309 - 73,665,394 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.17NCBI
Chmp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24103,576,453 - 103,622,566 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4103,576,515 - 103,623,959 (+)Ensembl
Rnor_6.0499,449,213 - 99,496,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,449,111 - 99,494,423 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,228,516 - 164,275,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,812,177 - 104,857,896 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,056,657 - 105,102,377 (+)NCBI
Celera492,735,412 - 92,780,550 (+)NCBICelera
Cytogenetic Map4q31NCBI
LOC100970314
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A88,105,216 - 88,224,003 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A88,106,242 - 88,165,104 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A86,559,695 - 86,619,615 (-)NCBIMhudiblu_PPA_v0panPan3
CHMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,600,793 - 38,658,368 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,286,558 - 38,344,133 (+)NCBI
ROS_Cfam_1.01739,333,768 - 39,391,356 (+)NCBI
ROS_Cfam_1.0 Ensembl1739,332,859 - 39,393,172 (+)Ensembl
UMICH_Zoey_3.11738,499,831 - 38,557,408 (+)NCBI
UNSW_CanFamBas_1.01738,536,249 - 38,593,804 (+)NCBI
UU_Cfam_GSD_1.01738,884,203 - 38,941,802 (+)NCBI
CHMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,206,921 - 58,279,245 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,206,921 - 58,279,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,964,960 - 61,037,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11420,536,490 - 20,654,761 (+)NCBIChlSab1.1chlSab2
ChlSab1.11420,536,490 - 20,654,761 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1420,594,817 - 20,654,404 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604591,842,572 - 91,903,310 (-)NCBIVero_WHO_p1.0
Chmp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474916,738,538 - 16,772,553 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013364319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013364319   ⟹   XP_013219773
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,813,720 - 79,834,454 (-)NCBI
SpeTri2.0NW_0049367121,023,994 - 1,044,727 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013219773 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3267951 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013219773   ⟸   XM_013364319
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025099 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000020143 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026239 UniProtKB/TrEMBL
InterPro Snf7_fam UniProtKB/TrEMBL
NCBI Gene Chmp3 ENTREZGENE
Pfam Snf7 UniProtKB/TrEMBL
UniProt I3N6Z7_ICTTR UniProtKB/TrEMBL