Gene: Cdh19 (cadherin 19) Ictidomys tridecemlineatus |
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Analyze |
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Symbol: |
Cdh19 |
Name: |
cadherin 19 |
RGD ID: |
12694556 |
Description: |
ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
cadherin-19; cadherin-19 pseudogene; cadherin-19-like; LOC101977542; LOC106145586; LOC110597409 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
Species |
Gene symbol and name |
Data Source |
Assertion derived from |
less info ...
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Orthologs 1 |
Homo sapiens (human): |
CDH19 (cadherin 19) |
NCBI |
Ortholog |
Mus musculus (house mouse): |
Cdh19 (cadherin 19, type 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Rattus norvegicus (Norway rat): |
Cdh19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Chinchilla lanigera (long-tailed chinchilla): |
Cdh19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Pan paniscus (bonobo/pygmy chimpanzee): |
CDH19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Canis lupus familiaris (dog): |
CDH19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Sus scrofa (pig): |
CDH19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Chlorocebus sabaeus (green monkey): |
CDH19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Heterocephalus glaber (naked mole-rat): |
Cdh19 (cadherin 19) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
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Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
Position: |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Cdh19 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CDH19 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 18 | 66,501,083 - 66,604,090 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 18 | 66,501,083 - 66,604,138 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 18 | 64,168,320 - 64,271,327 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 18 | 62,322,301 - 62,422,196 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 18 | 62,322,300 - 62,422,196 | NCBI | | | | | Celera | 18 | 60,889,278 - 60,989,190 (-) | NCBI | | Celera | | | Cytogenetic Map | 18 | q22.1 | NCBI | | | | | HuRef | 18 | 60,868,984 - 60,971,955 (-) | NCBI | | HuRef | | | CHM1_1 | 18 | 64,163,645 - 64,266,628 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 18 | 66,699,077 - 66,802,147 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Cdh19 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 110,811,802 - 110,905,331 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 110,816,056 - 110,905,314 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 110,888,002 - 110,977,601 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 110,888,326 - 110,977,584 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 112,785,772 - 112,873,949 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 112,716,742 - 112,804,919 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 113,646,024 - 113,729,311 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | E2.1 | NCBI | | | | | cM Map | 1 | 50.78 | NCBI | | | | |
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Cdh19 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 13 | 28,450,361 - 28,561,932 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 13 | 27,935,915 - 28,047,490 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 13 | 27,936,668 - 28,019,310 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 13 | 28,329,664 - 28,411,052 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 13 | 29,614,185 - 29,695,576 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 13 | 28,262,267 - 28,343,715 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 13 | 32,344,954 - 32,469,887 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 13 | 32,344,966 - 32,427,177 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 13 | 37,482,078 - 37,607,514 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 13 | 18,148,715 - 18,230,353 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 13 | 18,151,455 - 18,233,094 (-) | NCBI | | | | | Celera | 13 | 27,679,457 - 27,760,138 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | q11 | NCBI | | | | |
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Cdh19 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955402 | 50,112,516 - 50,213,896 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955402 | 50,110,907 - 50,213,882 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CDH19 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 17 | 84,005,355 - 84,107,699 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 18 | 69,697,969 - 69,800,300 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 18 | 59,852,350 - 59,954,744 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 18 | 63,156,263 - 63,258,546 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 18 | 63,156,263 - 63,258,767 (-) | Ensembl | panpan1.1 | | panPan2 | |
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CDH19 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 11,074,216 - 11,168,816 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 11,074,305 - 11,165,626 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 12,099,395 - 12,193,906 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 10,925,758 - 11,020,339 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 10,925,808 - 11,020,334 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 10,957,834 - 11,052,271 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 10,899,197 - 10,994,210 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 11,144,592 - 11,239,098 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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CDH19 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 155,669,420 - 155,758,548 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 155,669,361 - 155,758,550 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 172,916,611 - 173,006,358 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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CDH19 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 18 | 13,155,504 - 13,256,781 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 18 | 13,187,487 - 13,256,691 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666060 | 12,513,300 - 12,621,161 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Cdh19 (Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
RefSeq Acc Id: |
XM_040275462 ⟹ XP_040131396 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404944 | 24,452,037 - 24,483,848 (-) | NCBI |
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RefSeq Acc Id: |
XP_040131396 ⟸ XM_040275462 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2021-03-26 |
Cdh19 |
cadherin 19 |
LOC106145586 |
cadherin-19-like |
Symbol and/or name change |
5135510 |
APPROVED |
2021-03-25 |
LOC106145586 |
cadherin-19-like |
LOC101977542 |
cadherin-19 pseudogene |
Data merged from RGD:12454716 |
737654 |
PROVISIONAL |
2021-03-25 |
LOC106145586 |
cadherin-19-like |
LOC110597409 |
cadherin-19-like |
Data merged from RGD:13203144 |
737654 |
PROVISIONAL |
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