Cnot6 (CCR4-NOT transcription complex subunit 6) - Rat Genome Database

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Gene: Cnot6 (CCR4-NOT transcription complex subunit 6) Ictidomys tridecemlineatus
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Symbol: Cnot6
Name: CCR4-NOT transcription complex subunit 6
RGD ID: 12694482
Description: ENCODES a protein that exhibits catalytic activity (inferred); exonuclease activity (inferred); hydrolase activity (inferred); INVOLVED IN exonucleolytic catabolism of deadenylated mRNA (inferred); nuclear-transcribed mRNA catabolic process, no-go decay (inferred); nuclear-transcribed mRNA poly(A) tail shortening (inferred); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN CCR4-NOT complex (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCR4-NOT transcription complex subunit 6, transcript variant X1; CCR4-NOT transcription complex subunit 6, transcript variant X2; CCR4-NOT transcription complex subunit 6, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,100,828 - 119,174,587 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936739307,916 - 385,145 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936739308,117 - 384,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cnot6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,100,828 - 119,174,587 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936739307,916 - 385,145 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936739308,117 - 384,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385180,494,379 - 180,578,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5180,494,379 - 180,578,358 (+)EnsemblGRCh38hg38GRCh38
GRCh375179,921,379 - 180,005,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365179,854,023 - 179,937,959 (+)NCBINCBI36Build 36hg18NCBI36
Build 345179,854,022 - 179,937,959NCBI
Celera5175,544,212 - 175,628,139 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5174,644,736 - 174,728,395 (+)NCBIHuRef
CHM1_15179,353,628 - 179,437,772 (+)NCBICHM1_1
T2T-CHM13v2.05181,050,244 - 181,134,238 (+)NCBIT2T-CHM13v2.0
Cnot6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,562,324 - 49,604,227 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,562,330 - 49,603,550 (-)EnsemblGRCm39 Ensembl
GRCm381149,671,497 - 49,713,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,671,503 - 49,712,723 (-)EnsemblGRCm38mm10GRCm38
MGSCv371149,488,200 - 49,526,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,518,121 - 49,556,133 (-)NCBIMGSCv36mm8
Celera1154,236,493 - 54,264,486 (-)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.76NCBI
Cnot6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,479,892 - 34,532,166 (-)NCBIGRCr8
mRatBN7.21033,978,785 - 34,031,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,980,831 - 34,031,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1038,654,389 - 38,706,577 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0107,192,793 - 7,244,987 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01033,648,051 - 33,700,236 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01035,144,291 - 35,195,126 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1035,146,337 - 35,187,416 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,916,148 - 34,967,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,139,386 - 35,192,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11035,140,437 - 35,193,680 (-)NCBI
Celera1033,337,338 - 33,387,801 (-)NCBICelera
Cytogenetic Map10q21NCBI
Cnot6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408170,399 - 218,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955408170,399 - 239,492 (-)NCBIChiLan1.0ChiLan1.0
CNOT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24175,515,935 - 175,600,656 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15173,680,001 - 173,764,349 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05175,695,802 - 175,780,534 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,007,081 - 183,089,997 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,007,081 - 183,089,997 (+)Ensemblpanpan1.1panPan2
CNOT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1111,209,732 - 1,277,435 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl111,212,546 - 1,270,997 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha111,269,212 - 1,339,152 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0111,178,390 - 1,248,363 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl111,180,825 - 1,248,445 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,131,330 - 1,201,268 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0111,229,391 - 1,299,325 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0111,469,405 - 1,539,355 (-)NCBIUU_Cfam_GSD_1.0
CNOT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,132,939 - 78,202,492 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,131,236 - 78,202,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2279,564,705 - 79,635,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,218,170 - 82,303,552 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2382,218,180 - 82,303,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607513,637,452 - 13,723,808 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473343,138,758 - 43,187,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473343,137,751 - 43,195,004 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002806   ⟹   ENSSTOP00000002510
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936739307,916 - 385,145 (-)Ensembl
RefSeq Acc Id: XM_005339333   ⟹   XP_005339390
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213119,100,828 - 119,174,587 (-)NCBI
SpeTri2.0NW_004936739312,372 - 384,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735978   ⟹   XP_021591653
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213119,100,828 - 119,147,707 (-)NCBI
SpeTri2.0NW_004936739312,372 - 357,484 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040271956   ⟹   XP_040127890
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213119,100,828 - 119,147,707 (-)NCBI
RefSeq Acc Id: XM_040271957   ⟹   XP_040127891
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213119,100,828 - 119,147,696 (-)NCBI
RefSeq Acc Id: XP_005339390   ⟸   XM_005339333
- Peptide Label: isoform X2
- UniProtKB: I3M153 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591653   ⟸   XM_021735978
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040127890   ⟸   XM_040271956
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040127891   ⟸   XM_040271957
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000002510   ⟸   ENSSTOT00000002806

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002803 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002806.3 UniProtKB/TrEMBL
Gene3D-CATH 3.60.10.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Cnot6 ENTREZGENE
PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 UniProtKB/TrEMBL
  CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 6 UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF56219 UniProtKB/TrEMBL
UniProt I3M153 ENTREZGENE, UniProtKB/TrEMBL