Gimd1 (GIMAP family P-loop NTPase domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gimd1 (GIMAP family P-loop NTPase domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Gimd1
Name: GIMAP family P-loop NTPase domain containing 1
RGD ID: 12694390
Description: ENCODES a protein that exhibits GTP binding (inferred); nucleotide binding (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GTPase IMAP family member GIMD1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,055,813 - 14,066,244 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936814773,090 - 782,948 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936814773,090 - 782,948 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Gimd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,055,813 - 14,066,244 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936814773,090 - 782,948 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936814773,090 - 782,948 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GIMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384106,357,392 - 106,368,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4106,357,392 - 106,368,778 (-)EnsemblGRCh38hg38GRCh38
GRCh374107,278,549 - 107,289,935 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera4104,578,559 - 104,702,257 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4103,014,021 - 103,023,272 (-)NCBIHuRef
CHM1_14107,256,271 - 107,265,531 (-)NCBICHM1_1
T2T-CHM13v2.04109,668,465 - 109,679,852 (-)NCBIT2T-CHM13v2.0
Gimd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393132,335,607 - 132,353,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3132,335,581 - 132,351,112 (+)EnsemblGRCm39 Ensembl
GRCm383132,629,846 - 132,647,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3132,629,820 - 132,645,351 (+)EnsemblGRCm38mm10GRCm38
MGSCv373132,297,707 - 132,307,613 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363132,572,031 - 132,581,955 (+)NCBIMGSCv36mm8
Celera3139,063,357 - 139,073,263 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map361.47NCBI
Gimd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82223,777,876 - 223,812,582 (+)NCBIGRCr8
mRatBN7.22221,103,878 - 221,138,559 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,103,878 - 221,138,553 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2228,763,140 - 228,797,778 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02226,662,817 - 226,697,456 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02221,520,476 - 221,555,112 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02237,679,672 - 237,714,434 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2237,679,792 - 237,714,428 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,220,243 - 256,255,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42230,094,670 - 230,129,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2213,339,932 - 213,374,624 (+)NCBICelera
Cytogenetic Map2q43NCBI
Gimd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554963,049,859 - 3,060,961 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554963,049,862 - 3,060,961 (+)NCBIChiLan1.0ChiLan1.0
GIMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23104,455,715 - 104,469,260 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14104,750,996 - 104,764,528 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0498,838,222 - 98,849,590 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14109,445,476 - 109,456,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4109,445,476 - 109,456,055 (-)Ensemblpanpan1.1panPan2
GIMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13227,110,706 - 27,123,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3227,112,388 - 27,121,704 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3214,903,728 - 14,916,557 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03227,342,023 - 27,354,854 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3227,344,140 - 27,354,846 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13227,335,951 - 27,348,772 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03227,081,545 - 27,094,374 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03212,766,149 - 12,778,980 (+)NCBIUU_Cfam_GSD_1.0
GIMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8115,413,722 - 115,428,342 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18115,410,731 - 115,428,396 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28123,809,413 - 123,828,069 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GIMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1754,350,087 - 54,362,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl754,350,223 - 54,359,393 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603732,983,184 - 32,993,161 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gimd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248302,604,307 - 2,614,408 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248302,604,307 - 2,614,707 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005340714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000028051   ⟹   ENSSTOP00000017193
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936814773,090 - 782,948 (+)Ensembl
RefSeq Acc Id: XM_005340714   ⟹   XP_005340771
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530114,055,813 - 14,066,244 (+)NCBI
SpeTri2.0NW_004936814773,090 - 782,948 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340771 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017193.1
GenBank Protein KAG3275842 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005340771   ⟸   XM_005340714
- UniProtKB: I3MYJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017193   ⟸   ENSSTOT00000028051
Protein Domains
AIG1-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026704 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028051.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_AIG1 UniProtKB/TrEMBL
  GIMA/IAN/Toc UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Gimd1 ENTREZGENE
PANTHER GTPASE IMAP FAMILY MEMBER GIMD1 UniProtKB/TrEMBL
  PTHR10903 UniProtKB/TrEMBL
Pfam AIG1 UniProtKB/TrEMBL
PROSITE G_AIG1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3MYJ7 ENTREZGENE, UniProtKB/TrEMBL