Csrp1 (cysteine and glycine rich protein 1)

Gene: Csrp1 (cysteine and glycine rich protein 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Csrp1

Name:

cysteine and glycine rich protein 1

RGD ID:

12692003

Description:

ENCODES a protein that exhibits actinin binding (inferred); metal ion binding (inferred); structural constituent of muscle (inferred); INVOLVED IN platelet aggregation (ortholog); ASSOCIATED WITH endometrial hyperplasia (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); Z disc (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cysteine and glycine-rich protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	73,712,015 - 73,733,312 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	2,946,565 - 2,968,010 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	2,946,721 - 2,967,988 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

endometrial hyperplasia (ISO)

familial adult myoclonic epilepsy 5 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

parathyroid carcinoma (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

muscle tissue development (IEA)

platelet aggregation (ISO)

sarcomere organization (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Z disc (IEA)

Molecular Function

actinin binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

structural constituent of muscle (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Csrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	73,712,015 - 73,733,312 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	2,946,565 - 2,968,010 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	2,946,721 - 2,967,988 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSRP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	201,483,530 - 201,507,123 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	201,483,530 - 201,509,456 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	201,452,658 - 201,476,251 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	199,719,283 - 199,742,873 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	198,184,316 - 198,207,907	NCBI
Celera	1	174,576,528 - 174,600,256 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	172,618,670 - 172,642,392 (-)	NCBI		HuRef
CHM1_1	1	202,874,808 - 202,898,528 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	200,741,308 - 200,764,907 (-)	NCBI		T2T-CHM13v2.0

Csrp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	135,614,650 - 135,679,970 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	135,647,799 - 135,679,970 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	135,720,063 - 135,752,229 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	135,720,061 - 135,752,232 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	137,625,774 - 137,648,806 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	137,545,608 - 137,568,640 (+)	NCBI		MGSCv36	mm8
Celera	1	138,360,910 - 138,386,389 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	59.23	NCBI

Csrp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	49,709,928 - 49,731,141 (+)	NCBI		GRCr8
mRatBN7.2	13	47,158,171 - 47,179,388 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	47,167,789 - 47,179,384 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	49,767,088 - 49,788,318 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	51,055,154 - 51,076,383 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	48,318,235 - 48,339,461 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	52,553,843 - 52,575,054 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	52,553,775 - 52,575,051 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	57,601,914 - 57,623,354 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	48,750,202 - 48,775,815 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	48,764,244 - 48,789,856 (+)	NCBI
Celera	13	47,476,683 - 47,496,851 (+)	NCBI		Celera
RH 3.4 Map	13	149.8	RGD
Cytogenetic Map	13	q13	NCBI

Csrp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	37,595,420 - 37,615,612 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	37,595,481 - 37,615,384 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSRP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	47,874,304 - 47,898,181 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	47,839,016 - 47,862,864 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	177,081,772 - 177,105,448 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	181,382,994 - 181,406,863 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	181,382,994 - 181,406,863 (-)	Ensembl	panpan1.1		panPan2

CSRP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	1,400,650 - 1,421,918 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	1,397,912 - 1,421,007 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	1,450,814 - 1,472,009 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	1,407,306 - 1,428,562 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	1,404,765 - 1,428,562 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	1,394,963 - 1,416,145 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	1,503,000 - 1,524,132 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	1,527,323 - 1,548,513 (+)	NCBI		UU_Cfam_GSD_1.0

CSRP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	23,843,134 - 23,864,016 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	23,843,130 - 23,864,020 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	28,377,362 - 28,398,060 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSRP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	27,908,426 - 27,932,107 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	27,908,554 - 27,933,275 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	28,704,392 - 28,728,088 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csrp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	9,235,783 - 9,247,615 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	9,226,747 - 9,247,004 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000009745 ⟹ ENSSTOP00000008742

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936567	2,946,565 - 2,968,010 (+)	Ensembl

RefSeq Acc Id:

XM_005330355 ⟹ XP_005330412

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	73,712,015 - 73,733,312 (+)	NCBI
SpeTri2.0	NW_004936567	2,946,721 - 2,967,988 (+)	NCBI

Sequence:

show sequence

GAGCCTCGGGGCTTCGCTCCGTGACATCAGCCCTGCTGTGGTGCTGTGTGCAAAGCCTACTGGT
TGGCGTGGCGAGGGACACGCCTTCCCCGAGCGGAACAAAACGGCGCGCAGACTGGGCGCACCCA
GCCGTCGCTTCCGACAGTGCCTGCCGCCCGCGCCCGCCGCCGACCGCTGCCAGAATGCCGAACT
GGGGAGGAGGCAAGAAGTGCGGGGTGTGCCAGAAGACGGTCTACTTTGCAGAGGAGGTCCAGTG
CGAGGGCAACAGCTTCCACAAGTCCTGCTTCCTGTGCATGGTCTGCAAGAAGAATCTGGACAGC
ACCACTGTGGCCGTGCATGGGGAGGAGATCTACTGCAAGTCCTGCTATGGCAAGAAGTATGGGC
CAAAAGGCTACGGCTATGGGCAGGGCGCAGGCACGCTGAGCACTGACAAGGGGGAGTCCCTGGG
CATCAAGCATGAGGAAGCTCCTGGCCACAGACCTACCACCAACCCTAATGCCTCCAAGTTTGCC
CAGAAGATTGGAGGCTCTGAGCGCTGTCCCCGATGCAGCCAGGCAGTCTACGCGGCAGAGAAGG
TGATTGGTGCCGGGAAGTCTTGGCATAAGTCCTGCTTCCGATGTGCCAAGTGTGGCAAAGGGCT
GGAGTCAACCACTCTGGCTGACAAGGATGGTGAGATATACTGCAAAGGATGCTATGCTAAAAAC
TTCGGGCCCAAGGGCTTTGGCTTTGGACAAGGAGCTGGGGCCTTGGTCCACTCTGAGTGAGGTC
ACCACTGCCTGTCACACCCTGCCCACTCCTGAGCTTCTCATCGCCATCCCCTTCCCAGCAGCCT
TGGGGACCTCCAGGATTCTTTCTCACCCAGCCTAGCCGCACATCACTAATGACTTGAACTTGGG
CCTCTGGCTCCCTTTGGTTGGGGGTCTGCCTGAGCTCCCGCCCCACTAAGGAGCTACCCCTGCC
TGGCATCTCACACTATCACCAGTAGGAGATGTCTGTCTTTATAGTCTGTGTGGGACCAGATCCT
GTCTCCCTACACCTCTCTCCACAGACCTGGTCTTAACCTCTTAGGCTGAGCCTCCATCTTCATT
GGCCAAGACACCTGGGCCACGTGGTGGTGCCCTAAGCAGCAGCAACAGGCCAGGAGGGAGAGGG
AAACACGACCAAGATGGAGAGGGGGAAGGCTGTGGTTTATTTGACTCAGAGATTCTCTTAGGGA
AAGAGGGTGGGATTCTTGGTGTTTCTCAGAATAAGCCTAAGGAGTCCCAGCTCAGGGAGTCACT
ATGAGGAGGCAAAGAGGCATGCAGACAGGGTCATGGCCACAAAAAGGAACCACTCAGTTCTCTA
GGCCTCTTGCCTGTGAGTCTCTGTGGAACTGGAGTCCTCCCACCTGGGATTGGAGGGTAACAAC
CCAGATCCAAGGACCCCAAAGTCAGAACACCTTAAGCTTCTAGTTCCCTGTTCCATGCGGGGCG
GGGGGTTCCTAGAGAAATACTTCCAACACACATTCGCAGGAGCCAGTGGTCCAAATATCAGGGC
AGCTAGATCTGGCCCTATTCGTGGATCCTAAGGGTGCCGTGGGCGGCTCCTCCCCATCCCAGCA
CAGCGCAGGCTAGCCCTCTGCTGTCACCAGGCCTGGTTGTTCATCTGATTGAAGGGAGGCAGAC
ACATCCTCAGCCTGTATCCAACACCCTGTCCTTCTGTTTCCAGTCCTCAGGGCCTCCCCCAACC
CAAGACCTGCCCCTTCCACACCACCCTTCTCCAGGGATTCTTCTCTGGCCACATCACCCAACCC
TTCCAGAACCCCAGGTCAGGAACAGCAGAAAGAAGGGGGAGGGACCAGACTTTGCTGCTCCCAG
TGACTGAAAGGACCACACTGTCTGCAGCACAGGCTGTATTCAAGCTGATTTCTTATCTGGTTAA
TAAAGCTGTTTAGAACAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005330412	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008742.2
GenBank Protein	KAG3258415	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330412 ⟸ XM_005330355
- UniProtKB:	I3ME50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGK KYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYA AEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHS E hide sequence

RefSeq Acc Id:

ENSSTOP00000008742 ⟸ ENSSTOT00000009745

Protein Domains

LIM zinc-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009746	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009745.3	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	Csrp1	ENTREZGENE
PANTHER	CYSTEINE AND GLYCINE-RICH PROTEIN 1	UniProtKB/TrEMBL
	RHO-GTPASE-ACTIVATING PROTEIN LRG1	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	I3ME50	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD