Gap43 (growth associated protein 43) - Rat Genome Database

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Gene: Gap43 (growth associated protein 43) Ictidomys tridecemlineatus
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Symbol: Gap43
Name: growth associated protein 43
RGD ID: 12691648
Description: ENCODES a protein that exhibits lysophosphatidic acid binding (ortholog); phosphatidylinositol phosphate binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN axon choice point recognition (ortholog); axon guidance (ortholog); cell fate commitment (ortholog); PARTICIPATES IN N-cadherin signaling pathway; ASSOCIATED WITH Colonic Neoplasms (ortholog); Spinal Cord Injuries (ortholog); status epilepticus (ortholog); FOUND IN axon (ortholog); cell periphery (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: neuromodulin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602134,430,958 - 134,526,139 (-)NCBI
SpeTri2.0NW_0049365362,995,654 - 3,091,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Gap43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602134,430,958 - 134,526,139 (-)NCBI
SpeTri2.0NW_0049365362,995,654 - 3,091,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAP43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3115,623,510 - 115,721,490 (+)EnsemblGRCh38hg38GRCh38
GRCh383115,623,510 - 115,721,485 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373115,342,357 - 115,440,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363116,825,142 - 116,922,842 (+)NCBINCBI36hg18NCBI36
Build 343116,825,141 - 116,922,842NCBI
Celera3113,750,041 - 113,848,417 (+)NCBI
Cytogenetic Map3q13.31NCBI
HuRef3112,715,632 - 112,815,889 (+)NCBIHuRef
CHM1_13115,305,939 - 115,404,101 (+)NCBICHM1_1
Gap43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391642,068,915 - 42,161,014 (-)NCBIGRCm39mm39
GRCm39 Ensembl1642,068,805 - 42,161,014 (-)Ensembl
GRCm381642,248,552 - 42,340,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1642,248,442 - 42,340,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371642,248,665 - 42,340,764 (-)NCBIGRCm37mm9NCBIm37
MGSCv361642,167,884 - 42,259,983 (-)NCBImm8
Celera1642,611,179 - 42,699,387 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.37NCBI
Gap43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21158,376,371 - 58,470,047 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1158,624,198 - 58,717,914 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01158,624,198 - 58,717,916 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01162,777,623 - 62,870,998 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,989,085 - 60,083,971 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11160,046,673 - 60,141,558 (+)NCBI
Celera1157,921,205 - 58,014,789 (+)NCBICelera
Cytogenetic Map11q21NCBI
Gap43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542715,695,963 - 15,791,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542715,696,549 - 15,791,279 (+)NCBIChiLan1.0ChiLan1.0
GAP43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13119,682,743 - 119,780,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3119,734,942 - 119,780,290 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03112,765,576 - 112,863,118 (+)NCBIMhudiblu_PPA_v0panPan3
GAP43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13319,668,491 - 19,770,509 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3319,656,835 - 19,770,408 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3319,775,530 - 19,877,471 (+)NCBI
ROS_Cfam_1.03319,917,865 - 20,017,414 (+)NCBI
UMICH_Zoey_3.13319,722,015 - 19,823,783 (+)NCBI
UNSW_CanFamBas_1.03319,768,803 - 19,870,740 (+)NCBI
UU_Cfam_GSD_1.03320,313,727 - 20,415,899 (+)NCBI
GAP43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13144,364,314 - 144,855,433 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113144,364,314 - 144,458,136 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213153,842,841 - 153,937,719 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAP43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12265,142,472 - 65,242,185 (-)NCBI
ChlSab1.1 Ensembl2265,142,039 - 65,242,222 (-)Ensembl
Vero_WHO_p1.0NW_023666041101,151,539 - 101,250,605 (+)NCBI
Gap43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473132,629,586 - 32,748,515 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005327612   ⟹   XP_005327669
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602134,430,958 - 134,526,139 (-)NCBI
SpeTri2.0NW_0049365362,995,654 - 3,091,079 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327669 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271422 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005327669   ⟸   XM_005327612
- Sequence:
Protein Domains
Neuromodulin   Neuromodulin_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024146 ENTREZGENE
Ensembl Protein ENSSTOP00000016111 ENTREZGENE
NCBI Gene Gap43 ENTREZGENE