Sord (sorbitol dehydrogenase) - Rat Genome Database

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Gene: Sord (sorbitol dehydrogenase) Ictidomys tridecemlineatus
Analyze
Symbol: Sord
Name: sorbitol dehydrogenase
RGD ID: 12691449
Description: ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion binding (ortholog); INVOLVED IN response to cadmium ion (ortholog); response to copper ion (ortholog); response to hormone (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); cataract (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorbitol dehydrogenase, transcript variant X1; sorbitol dehydrogenase, transcript variant X2; sorbitol dehydrogenase, transcript variant X3; sorbitol dehydrogenase, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,912,015 - 89,957,526 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364717,760,052 - 7,795,671 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364717,760,097 - 7,805,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Sord
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,912,015 - 89,957,526 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364717,760,052 - 7,795,671 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364717,760,097 - 7,805,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SORD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,023,195 - 45,077,185 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1545,023,147 - 45,077,185 (+)EnsemblGRCh38hg38GRCh38
GRCh371545,315,393 - 45,369,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361543,102,633 - 43,154,331 (+)NCBINCBI36Build 36hg18NCBI36
Build 341543,102,643 - 43,154,330NCBI
Celera1522,206,385 - 22,258,718 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1522,139,528 - 22,191,494 (+)NCBIHuRef
CHM1_11545,433,621 - 45,485,599 (+)NCBICHM1_1
T2T-CHM13v2.01542,831,215 - 42,885,202 (+)NCBIT2T-CHM13v2.0
Sord
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,065,320 - 122,095,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,065,230 - 122,095,821 (+)EnsemblGRCm39 Ensembl
GRCm382122,234,839 - 122,265,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,234,749 - 122,265,340 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,060,575 - 122,091,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,926,280 - 121,956,778 (+)NCBIMGSCv36mm8
Celera2123,384,583 - 123,415,681 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.59NCBI
Sord
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23109,184,697 - 109,216,133 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3109,184,676 - 109,216,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,858,692 - 112,889,823 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03121,454,207 - 121,485,340 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03119,114,585 - 119,145,718 (+)NCBIRnor_WKY
Rnor_6.03114,176,127 - 114,207,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3114,176,309 - 114,207,366 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,716,804 - 120,746,951 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,016,830 - 109,048,446 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,922,464 - 108,953,299 (+)NCBI
Celera3108,082,883 - 108,113,935 (+)NCBICelera
Cytogenetic Map3q35NCBI
Sord
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554098,303,602 - 8,333,869 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554098,305,819 - 8,333,733 (-)NCBIChiLan1.0ChiLan1.0
SORD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11542,363,854 - 42,375,848 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01523,971,017 - 24,025,043 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SORD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,467,259 - 11,501,166 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,467,253 - 11,500,641 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,523,461 - 11,557,483 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,603,460 - 11,637,883 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,603,473 - 11,637,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,509,757 - 11,544,158 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03011,632,822 - 11,666,883 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03011,751,896 - 11,786,120 (+)NCBIUU_Cfam_GSD_1.0
SORD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,655,156 - 126,701,138 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,659,198 - 126,701,084 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21141,259,120 - 141,301,021 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SORD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12638,129,236 - 38,173,867 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2638,126,911 - 38,155,381 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048102,884,429 - 102,931,888 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sord
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473114,156,522 - 14,185,989 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473114,159,439 - 14,185,960 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008707   ⟹   ENSSTOP00000007803
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364717,760,052 - 7,795,671 (+)Ensembl
RefSeq Acc Id: XM_005316517   ⟹   XP_005316574
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864089,912,019 - 89,947,290 (+)NCBI
SpeTri2.0NW_0049364717,760,097 - 7,795,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726505   ⟹   XP_021582180
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864089,912,016 - 89,954,532 (+)NCBI
SpeTri2.0NW_0049364717,760,097 - 7,802,351 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726509   ⟹   XP_021582184
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864089,912,016 - 89,957,526 (+)NCBI
SpeTri2.0NW_0049364717,760,097 - 7,805,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726511   ⟹   XP_021582186
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864089,912,015 - 89,954,532 (+)NCBI
SpeTri2.0NW_0049364717,760,247 - 7,802,351 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274755   ⟹   XP_040130689
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864089,912,016 - 89,952,768 (+)NCBI
RefSeq Acc Id: XR_005729150
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864089,912,018 - 89,952,512 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005316574   ⟸   XM_005316517
- Peptide Label: isoform X2
- UniProtKB: I3MC51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582184   ⟸   XM_021726509
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021582180   ⟸   XM_021726505
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021582186   ⟸   XM_021726511
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040130689   ⟸   XM_040274755
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000007803   ⟸   ENSSTOT00000008707
Protein Domains
PKS_ER


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008709 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000007803 ENTREZGENE
  ENSSTOP00000007803.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008707.3 UniProtKB/TrEMBL
InterPro ADH_C UniProtKB/TrEMBL
  ADH_N UniProtKB/TrEMBL
  ADH_Zn_CS UniProtKB/TrEMBL
  GroES-like_sf UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  PKS_ER UniProtKB/TrEMBL
  SDH-like UniProtKB/TrEMBL
NCBI Gene Sord ENTREZGENE
Pfam ADH_N UniProtKB/TrEMBL
  ADH_zinc_N UniProtKB/TrEMBL
PROSITE ADH_ZINC UniProtKB/TrEMBL
SMART PKS_ER UniProtKB/TrEMBL
Superfamily-SCOP SSF50129 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt I3MC51 ENTREZGENE, UniProtKB/TrEMBL