Trim37 (tripartite motif containing 37) - Rat Genome Database

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Gene: Trim37 (tripartite motif containing 37) Ictidomys tridecemlineatus
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Symbol: Trim37
Name: tripartite motif containing 37
RGD ID: 12691149
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone H2AK119 ubiquitin ligase activity (inferred); protein homodimerization activity (inferred); INVOLVED IN protein import into peroxisome matrix (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Dwarfism (ortholog); Fibrous Dysplasia of Bone (ortholog); FOUND IN ESC/E(Z) complex (ortholog); peroxisomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase TRIM37; tripartite motif containing 37, transcript variant X1; tripartite motif containing 37, transcript variant X2; tripartite motif containing 37, transcript variant X3; tripartite motif containing 37, transcript variant X4; tripartite motif containing 37, transcript variant X5; tripartite motif containing 37, transcript variant X7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,720,472 - 32,911,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364904,163,719 - 4,354,932 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364904,163,871 - 4,310,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trim37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,720,472 - 32,911,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364904,163,719 - 4,354,932 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364904,163,871 - 4,310,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381758,967,201 - 59,106,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1758,982,638 - 59,106,921 (-)EnsemblGRCh38hg38GRCh38
GRCh371757,060,010 - 57,184,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361754,414,792 - 54,539,011 (-)NCBINCBI36Build 36hg18NCBI36
Build 341754,430,346 - 54,539,011NCBI
Celera1753,522,345 - 53,646,906 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1752,420,495 - 52,544,850 (-)NCBIHuRef
CHM1_11757,125,449 - 57,249,763 (-)NCBICHM1_1
T2T-CHM13v2.01759,835,276 - 59,974,976 (-)NCBIT2T-CHM13v2.0
Trim37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,017,675 - 87,141,700 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,017,903 - 87,111,509 (+)EnsemblGRCm39 Ensembl
GRCm381187,126,790 - 87,250,874 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,127,077 - 87,220,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv371186,940,579 - 87,034,184 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,943,272 - 87,036,877 (+)NCBIMGSCv36mm8
Celera1196,729,142 - 96,822,534 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.93NCBI
Trim37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,440,672 - 72,572,831 (+)NCBIGRCr8
mRatBN7.21071,943,384 - 72,075,563 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,943,375 - 72,075,558 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,553,912 - 76,686,077 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,058,816 - 76,190,978 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,523,340 - 71,655,486 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,436,165 - 74,568,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,436,208 - 74,568,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,532,027 - 75,664,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,404,911 - 75,537,072 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,419,046 - 75,520,023 (+)NCBI
Celera1070,859,603 - 70,991,657 (+)NCBICelera
Cytogenetic Map10q26NCBI
Trim37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554513,878,416 - 3,989,208 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554513,839,757 - 4,014,178 (+)NCBIChiLan1.0ChiLan1.0
TRIM37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21975,150,473 - 75,273,925 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11779,961,021 - 80,087,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01753,070,235 - 53,178,209 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11757,904,813 - 58,027,160 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1757,904,813 - 58,027,100 (-)Ensemblpanpan1.1panPan2
TRIM37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,446,903 - 33,687,650 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,446,918 - 33,687,555 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,681,076 - 32,921,453 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,252,571 - 34,493,167 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,252,586 - 34,493,173 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,165,440 - 33,278,937 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,327,586 - 33,567,948 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,414,104 - 33,654,617 (-)NCBIUU_Cfam_GSD_1.0
TRIM37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,260,154 - 35,393,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,259,292 - 35,393,464 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,114,377 - 37,162,720 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,310,090 - 34,446,887 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,310,159 - 34,436,177 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660775,112,103 - 5,249,679 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624871912,140 - 1,021,354 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624871899,931 - 1,049,583 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002483561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000012865   ⟹   ENSSTOP00000011530
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364904,163,719 - 4,354,932 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000035844   ⟹   ENSSTOP00000029638
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364904,163,719 - 4,288,399 (+)Ensembl
RefSeq Acc Id: XM_005321568   ⟹   XP_005321625
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,789,295 - 32,911,203 (-)NCBI
SpeTri2.0NW_0049364904,163,958 - 4,285,753 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357072   ⟹   XP_013212526
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,765,030 - 32,911,203 (-)NCBI
SpeTri2.0NW_0049364904,163,872 - 4,310,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724068   ⟹   XP_021579743
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,765,030 - 32,911,203 (-)NCBI
SpeTri2.0NW_0049364904,164,270 - 4,310,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724070   ⟹   XP_021579745
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,765,030 - 32,910,899 (-)NCBI
SpeTri2.0NW_0049364904,163,871 - 4,310,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724071   ⟹   XP_021579746
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,765,030 - 32,896,203 (-)NCBI
SpeTri2.0NW_0049364904,178,842 - 4,310,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269048   ⟹   XP_040124982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,795,417 - 32,911,203 (-)NCBI
RefSeq Acc Id: XM_040269049   ⟹   XP_040124983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,789,298 - 32,911,203 (-)NCBI
RefSeq Acc Id: XM_040269050   ⟹   XP_040124984
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,789,298 - 32,911,203 (-)NCBI
RefSeq Acc Id: XM_040269052   ⟹   XP_040124986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,765,030 - 32,910,899 (-)NCBI
RefSeq Acc Id: XM_040269053   ⟹   XP_040124987
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,720,472 - 32,911,203 (-)NCBI
RefSeq Acc Id: XM_040269054   ⟹   XP_040124988
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,798,833 - 32,910,899 (-)NCBI
RefSeq Acc Id: XM_040269055   ⟹   XP_040124989
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,798,833 - 32,910,899 (-)NCBI
RefSeq Acc Id: XM_040269056   ⟹   XP_040124990
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,809,542 - 32,911,203 (-)NCBI
RefSeq Acc Id: XM_040269057   ⟹   XP_040124991
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,765,030 - 32,899,622 (-)NCBI
RefSeq Acc Id: XM_040269058   ⟹   XP_040124992
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,798,833 - 32,902,155 (-)NCBI
RefSeq Acc Id: XP_005321625   ⟸   XM_005321568
- Peptide Label: isoform X8
- UniProtKB: A0A287D7X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212526   ⟸   XM_013357072
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021579745   ⟸   XM_021724070
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_021579743   ⟸   XM_021724068
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021579746   ⟸   XM_021724071
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_040124987   ⟸   XM_040269053
- Peptide Label: isoform X7
- UniProtKB: I3MJY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040124986   ⟸   XM_040269052
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040124991   ⟸   XM_040269057
- Peptide Label: isoform X14
RefSeq Acc Id: XP_040124983   ⟸   XM_040269049
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040124984   ⟸   XM_040269050
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040124982   ⟸   XM_040269048
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040124988   ⟸   XM_040269054
- Peptide Label: isoform X10
RefSeq Acc Id: XP_040124989   ⟸   XM_040269055
- Peptide Label: isoform X11
RefSeq Acc Id: XP_040124992   ⟸   XM_040269058
- Peptide Label: isoform X15
RefSeq Acc Id: XP_040124990   ⟸   XM_040269056
- Peptide Label: isoform X12
RefSeq Acc Id: ENSSTOP00000011530   ⟸   ENSSTOT00000012865
RefSeq Acc Id: ENSSTOP00000029638   ⟸   ENSSTOT00000035844
Protein Domains
B box-type   MATH   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012850 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012865.3 UniProtKB/TrEMBL
  ENSSTOT00000035844.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Bbox_C UniProtKB/TrEMBL
  MATH/TRAF_dom UniProtKB/TrEMBL
  TRAF-like UniProtKB/TrEMBL
  TRIM37_MATH UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Trim37 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM37 UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM37 UniProtKB/TrEMBL
Pfam MATH UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PROSITE MATH UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBC UniProtKB/TrEMBL
  BBOX UniProtKB/TrEMBL
  MATH UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/TrEMBL
UniProt A0A287D7X6 ENTREZGENE, UniProtKB/TrEMBL
  I3MJY1 ENTREZGENE, UniProtKB/TrEMBL