Vtn (vitronectin) - Rat Genome Database

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Gene: Vtn (vitronectin) Ictidomys tridecemlineatus
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Symbol: Vtn
Name: vitronectin
RGD ID: 12691135
Description: ENCODES a protein that exhibits collagen binding (ortholog); extracellular matrix binding (ortholog); heparin binding (ortholog); INVOLVED IN cell adhesion mediated by integrin (ortholog); cell migration (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN forkhead class A signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Churg-Strauss syndrome (ortholog); coronary artery disease (ortholog); Crohn's disease (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,644,330 - 41,647,294 (-)NCBI
SpeTri2.0NW_0049365384,522,275 - 4,525,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Vtn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,644,330 - 41,647,294 (-)NCBI
SpeTri2.0NW_0049365384,522,275 - 4,525,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1728,367,284 - 28,373,091 (-)EnsemblGRCh38hg38GRCh38
GRCh381728,367,284 - 28,370,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371726,694,305 - 26,697,328 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,718,425 - 23,721,500 (-)NCBINCBI36hg18NCBI36
Build 341723,718,424 - 23,721,844NCBI
Celera1723,556,056 - 23,559,131 (-)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1722,902,707 - 22,905,782 (-)NCBIHuRef
CHM1_11726,757,231 - 26,760,306 (-)NCBICHM1_1
Vtn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,389,946 - 78,393,151 (+)NCBIGRCm39mm39
GRCm39 Ensembl1178,389,917 - 78,393,150 (+)Ensembl
GRCm381178,499,120 - 78,502,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,499,091 - 78,502,324 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,312,622 - 78,315,827 (+)NCBIGRCm37mm9NCBIm37
MGSCv361178,315,481 - 78,318,519 (+)NCBImm8
Celera1188,131,193 - 88,134,398 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Vtn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21063,394,732 - 63,397,812 (+)NCBI
Rnor_6.0 Ensembl1065,767,053 - 65,771,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01065,767,960 - 65,771,040 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01065,872,580 - 65,875,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,609,242 - 64,612,322 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11064,622,874 - 64,625,943 (+)NCBI
Celera1062,371,307 - 62,374,387 (+)NCBICelera
Cytogenetic Map10q25NCBI
Vtn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554814,765,078 - 4,768,027 (+)NCBIChiLan1.0ChiLan1.0
VTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,906,508 - 28,909,583 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,906,508 - 28,909,583 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01728,403,813 - 28,407,202 (+)NCBIMhudiblu_PPA_v0panPan3
VTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,617,860 - 42,620,825 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,614,941 - 42,630,864 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,774,787 - 41,777,752 (-)NCBI
ROS_Cfam_1.0943,437,036 - 43,440,001 (-)NCBI
UMICH_Zoey_3.1942,221,266 - 42,224,231 (-)NCBI
UNSW_CanFamBas_1.0942,512,485 - 42,515,450 (-)NCBI
UU_Cfam_GSD_1.0942,589,551 - 42,592,516 (-)NCBI
VTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,617,499 - 44,660,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,650,532 - 44,653,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2185,021 - 8,459 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VTN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,133,903 - 22,138,077 (-)NCBI
ChlSab1.1 Ensembl1622,133,138 - 22,136,815 (-)Ensembl
Vtn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624786970,288 - 973,344 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005327813   ⟹   XP_005327870
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560241,644,330 - 41,647,294 (-)NCBI
SpeTri2.0NW_0049365384,522,275 - 4,525,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359747   ⟹   XP_013215201
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560241,644,330 - 41,647,293 (-)NCBI
SpeTri2.0NW_0049365384,522,275 - 4,525,244 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327870 (Get FASTA)   NCBI Sequence Viewer  
  XP_013215201 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013215201   ⟸   XM_013359747
- Peptide Label: isoform X2
- UniProtKB: I3MSG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005327870   ⟸   XM_005327813
- Peptide Label: isoform X1
- Sequence:
Protein Domains
SMB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027874 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000015058 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020397 UniProtKB/TrEMBL
Gene3D-CATH 2.110.10.10 UniProtKB/TrEMBL
InterPro Hemopexin-like_dom UniProtKB/TrEMBL
  Hemopexin-like_dom_sf UniProtKB/TrEMBL
  Hemopexin-like_repeat UniProtKB/TrEMBL
  Hemopexin_CS UniProtKB/TrEMBL
  Somatomedin_B-like_dom_sf UniProtKB/TrEMBL
  Somatomedin_B_chordata UniProtKB/TrEMBL
  Somatomedin_B_dom UniProtKB/TrEMBL
NCBI Gene Vtn ENTREZGENE
Pfam Hemopexin UniProtKB/TrEMBL
  Somatomedin_B UniProtKB/TrEMBL
PRINTS SOMATOMEDINB UniProtKB/TrEMBL
PROSITE HEMOPEXIN UniProtKB/TrEMBL
  HEMOPEXIN_2 UniProtKB/TrEMBL
  SMB_1 UniProtKB/TrEMBL
  SMB_2 UniProtKB/TrEMBL
SMART SM00120 UniProtKB/TrEMBL
  SM00201 UniProtKB/TrEMBL
Superfamily-SCOP SSF50923 UniProtKB/TrEMBL
  SSF90188 UniProtKB/TrEMBL
UniProt I3MSG3 ENTREZGENE, UniProtKB/TrEMBL