LOC101971896 (olfactory receptor 6C70) - Rat Genome Database
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Gene: LOC101971896 (olfactory receptor 6C70) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101971896
Name: olfactory receptor 6C70
RGD ID: 12690511
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: olfactory receptor 6C70-like
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937074119,506 - 120,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC101971896
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937074119,506 - 120,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OR6C70
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1255,469,200 - 55,470,138 (-)EnsemblGRCh38hg38GRCh38
GRCh381255,469,200 - 55,470,138 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371255,862,984 - 55,863,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,149,251 - 54,150,189 (-)NCBINCBI36hg18NCBI36
Build 341254,149,250 - 54,150,189NCBI
Celera1255,515,181 - 55,516,119 (-)NCBI
Cytogenetic Map12q13.2NCBI
HuRef1252,901,748 - 52,902,686 (-)NCBIHuRef
CHM1_11255,829,771 - 55,830,709 (-)NCBICHM1_1
Olfr814
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910129,709,692 - 129,710,624 (-)NCBIGRCm39mm39
GRCm3810129,873,823 - 129,874,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10129,871,473 - 129,879,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710129,310,879 - 129,311,811 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610129,276,772 - 129,277,704 (-)NCBImm8
Celera10132,259,472 - 132,260,404 (-)NCBICelera
Cytogenetic Map10D3NCBI
Olr1057
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0716,404,763 - 16,405,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl716,404,755 - 16,405,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0716,571,902 - 16,572,840 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.477,912,859 - 7,913,797 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.177,912,858 - 7,913,797 (-)NCBI
Celera74,699,018 - 4,699,956 (-)NCBICelera
Cytogenetic Map7q11NCBI
OR6C69
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2768,503 - 69,441 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12768,503 - 69,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC100513710
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2X142,540,005 - 142,540,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103238470
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,459,901 - 51,461,782 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005342436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01123508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005342436   ⟹   XP_005342493
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004937074119,506 - 120,467 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342493 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005342493   ⟸   XM_005342436
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022954 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009285 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010348 ENTREZGENE, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC101971896 ENTREZGENE
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
UniProt I3MFB9_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101971896  olfactory receptor 6C70    olfactory receptor 6C70-like  Symbol and/or name change 5135510 APPROVED