Ca10 (carbonic anhydrase 10) - Rat Genome Database

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Gene: Ca10 (carbonic anhydrase 10) Ictidomys tridecemlineatus
Analyze
Symbol: Ca10
Name: carbonic anhydrase 10
RGD ID: 12689948
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: carbonic anhydrase-related protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,798,112 - 27,274,308 (-)NCBI
SpeTri2.0NW_0049364909,800,533 - 10,277,034 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ca10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,798,112 - 27,274,308 (-)NCBI
SpeTri2.0NW_0049364909,800,533 - 10,277,034 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1751,630,313 - 52,160,017 (-)EnsemblGRCh38hg38GRCh38
GRCh381751,630,313 - 52,160,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371749,707,674 - 50,237,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361747,062,673 - 47,592,376 (-)NCBINCBI36hg18NCBI36
Build 341747,062,682 - 47,591,086NCBI
Celera1746,168,954 - 46,698,633 (-)NCBI
Cytogenetic Map17q21.33-q22NCBI
HuRef1745,077,023 - 45,606,524 (-)NCBIHuRef
CHM1_11749,772,091 - 50,302,474 (-)NCBICHM1_1
Car10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,988,807 - 93,492,577 (+)NCBIGRCm39mm39
GRCm39 Ensembl1192,988,854 - 93,492,575 (+)Ensembl
GRCm381193,096,805 - 93,601,751 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,098,028 - 93,601,749 (+)EnsemblGRCm38mm10GRCm38
MGSCv371192,960,604 - 93,463,065 (+)NCBIGRCm37mm9NCBIm37
MGSCv361192,914,500 - 93,417,363 (+)NCBImm8
Celera11102,697,483 - 103,221,769 (+)NCBICelera
Cytogenetic Map11DNCBI
Car10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21078,055,875 - 78,556,490 (+)NCBI
Rnor_6.0 Ensembl1080,790,168 - 81,296,363 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01080,790,151 - 81,297,621 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01080,633,872 - 81,133,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41081,756,486 - 82,238,335 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1076,855,697 - 77,353,776 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ca10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554519,877,223 - 10,362,414 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554519,877,768 - 10,362,363 (+)NCBIChiLan1.0ChiLan1.0
CA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11750,587,548 - 51,126,498 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1750,587,548 - 51,124,265 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01745,718,219 - 46,257,295 (-)NCBIMhudiblu_PPA_v0panPan3
CA10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1927,382,508 - 27,863,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl927,383,588 - 27,862,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha926,709,833 - 27,197,336 (-)NCBI
ROS_Cfam_1.0928,176,480 - 28,657,670 (-)NCBI
UMICH_Zoey_3.1926,942,042 - 27,417,434 (-)NCBI
UNSW_CanFamBas_1.0927,201,860 - 27,676,691 (-)NCBI
UU_Cfam_GSD_1.0927,332,548 - 27,807,012 (-)NCBI
CA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1227,957,732 - 28,617,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11227,979,321 - 28,619,022 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21228,270,028 - 28,295,145 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA10
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11641,169,232 - 41,720,008 (+)NCBI
Ca10
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247957,284,520 - 7,792,200 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005321606   ⟹   XP_005321663
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560226,798,112 - 27,274,308 (-)NCBI
SpeTri2.0NW_0049364909,800,533 - 10,277,034 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724101   ⟹   XP_021579776
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560226,798,112 - 27,273,564 (-)NCBI
SpeTri2.0NW_0049364909,801,358 - 10,277,027 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040268984   ⟹   XP_040124918
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560226,798,112 - 27,273,194 (-)NCBI
RefSeq Acc Id: XM_040268985   ⟹   XP_040124919
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560226,798,112 - 27,273,928 (-)NCBI
RefSeq Acc Id: XM_040268986   ⟹   XP_040124920
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560226,798,112 - 27,273,362 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005321663   ⟸   XM_005321606
- UniProtKB: I3MRF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579776   ⟸   XM_021724101
- Sequence:
RefSeq Acc Id: XP_040124919   ⟸   XM_040268985
RefSeq Acc Id: XP_040124920   ⟸   XM_040268986
RefSeq Acc Id: XP_040124918   ⟸   XM_040268984
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016378 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014664 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000024834 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016380 UniProtKB/TrEMBL
  ENSSTOT00000034554 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro alpha_CARP_X/XI UniProtKB/TrEMBL
  CA10 UniProtKB/TrEMBL
  Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
NCBI Gene Ca10 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF91 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A287CU79_ICTTR UniProtKB/TrEMBL
  I3MRF7 ENTREZGENE, UniProtKB/TrEMBL