Acsm2b (acyl-CoA synthetase medium chain family member 2B) - Rat Genome Database

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Gene: Acsm2b (acyl-CoA synthetase medium chain family member 2B) Ictidomys tridecemlineatus
Analyze
Symbol: Acsm2b
Name: acyl-CoA synthetase medium chain family member 2B
RGD ID: 12689623
Description: ENCODES a protein that exhibits benzoate-CoA ligase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (inferred); fatty acid biosynthetic process (inferred); lipid metabolic process (inferred); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA synthetase medium-chain family member 2B; acyl-coenzyme A synthetase ACSM2B, mitochondrial; LOC101969757
RGD Orthologs
Human
Chinchilla
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344117,826,462 - 117,846,149 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365015,925,845 - 5,943,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Acsm2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344117,826,462 - 117,846,149 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365015,925,845 - 5,943,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSM2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381620,536,226 - 20,576,367 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1620,536,226 - 20,576,427 (-)EnsemblGRCh38hg38GRCh38
GRCh371620,547,548 - 20,587,689 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361620,455,581 - 20,495,196 (-)NCBINCBI36Build 36hg18NCBI36
Celera1619,857,086 - 19,875,825 (-)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1619,084,595 - 19,123,463 (-)NCBIHuRef
CHM1_11620,635,264 - 20,674,904 (-)NCBICHM1_1
T2T-CHM13v2.01620,467,090 - 20,507,346 (-)NCBIT2T-CHM13v2.0
Acsm2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554424,083,805 - 4,105,324 (+)NCBIChiLan1.0ChiLan1.0
ACSM2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1518,731,803 - 18,767,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606811,137,468 - 11,177,572 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021725552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021725552   ⟹   XP_021581227
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344117,826,462 - 117,846,149 (+)NCBI
SpeTri2.0NW_0049365015,925,845 - 5,943,462 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021581227 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017520.2
  ENSSTOP00000026225.1
  ENSSTOP00000027357.1
  ENSSTOP00000028931.1
GenBank Protein KAG3259432 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021581227   ⟸   XM_021725552
- UniProtKB: I3MZH4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
AMP-binding enzyme C-terminal   AMP-dependent synthetase/ligase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028432 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024525.2 UniProtKB/TrEMBL
  ENSSTOT00000033937.1 UniProtKB/TrEMBL
  ENSSTOT00000042553.1 UniProtKB/TrEMBL
  ENSSTOT00000043003.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
NCBI Gene LOC101969757 ENTREZGENE
PANTHER ACYL-COENZYME A SYNTHETASE UniProtKB/TrEMBL
  ACYL-COENZYME A SYNTHETASE ACSM2B, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0A287CY17_ICTTR UniProtKB/TrEMBL
  A0A287D1F7_ICTTR UniProtKB/TrEMBL
  A0A287D5Y8_ICTTR UniProtKB/TrEMBL
  I3MZH4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 Acsm2b  acyl-CoA synthetase medium chain family member 2B  LOC101969757  acyl-coenzyme A synthetase ACSM2B, mitochondrial  Symbol and/or name change 5135510 APPROVED