Atp2c1 (ATPase secretory pathway Ca2+ transporting 1) - Rat Genome Database

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Gene: Atp2c1 (ATPase secretory pathway Ca2+ transporting 1) Ictidomys tridecemlineatus
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Symbol: Atp2c1
Name: ATPase secretory pathway Ca2+ transporting 1
RGD ID: 12689329
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); manganese ion binding (ortholog); P-type calcium transporter activity (ortholog); INVOLVED IN calcium ion transport (ortholog); intracellular calcium ion homeostasis (ortholog); intracellular manganese ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); Hailey-Hailey disease (ortholog); FOUND IN cis-Golgi network membrane (ortholog); secretory granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase secretory pathway Ca2+ transporting 1, transcript variant X1; ATPase secretory pathway Ca2+ transporting 1, transcript variant X2; ATPase secretory pathway Ca2+ transporting 1, transcript variant X3; ATPase secretory pathway Ca2+ transporting 1, transcript variant X4; ATPase secretory pathway Ca2+ transporting 1, transcript variant X5; calcium-transporting ATPase type 2C member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365294,361,424 - 4,474,436 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365294,340,131 - 4,474,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp2c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365294,361,424 - 4,474,436 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365294,340,131 - 4,474,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383130,850,595 - 131,016,712 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3130,850,595 - 131,016,712 (+)EnsemblGRCh38hg38GRCh38
GRCh373130,569,439 - 130,735,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,096,124 - 132,218,246 (+)NCBINCBI36Build 36hg18NCBI36
Build 343132,096,131 - 132,204,690NCBI
Celera3129,038,713 - 129,160,803 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3127,954,018 - 128,119,693 (+)NCBIHuRef
CHM1_13130,532,422 - 130,699,080 (+)NCBICHM1_1
T2T-CHM13v2.03133,594,441 - 133,760,462 (+)NCBIT2T-CHM13v2.0
Atp2c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,288,561 - 105,398,456 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,280,738 - 105,404,518 (-)EnsemblGRCm39 Ensembl
GRCm389105,411,362 - 105,521,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,403,539 - 105,527,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,313,692 - 105,397,447 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369105,269,462 - 105,353,199 (-)NCBIMGSCv36mm8
Celera9105,007,157 - 105,064,980 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Atp2c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,913,551 - 115,034,706 (-)NCBIGRCr8
mRatBN7.28106,034,777 - 106,155,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8106,034,636 - 106,156,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,672,126 - 111,755,122 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,871,371 - 109,954,375 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,714,075 - 107,797,076 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,953,959 - 114,039,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,955,647 - 114,013,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,341,077 - 113,426,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,516,092 - 110,603,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18110,562,294 - 110,623,075 (-)NCBI
Celera8105,376,283 - 105,459,249 (-)NCBICelera
Cytogenetic Map8q32NCBI
Atp2c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,383,150 - 7,519,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555017,382,657 - 7,519,789 (-)NCBIChiLan1.0ChiLan1.0
ATP2C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22128,809,482 - 128,973,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13128,814,209 - 128,978,056 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03127,937,272 - 128,101,060 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,301,721 - 135,423,700 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,260,796 - 135,423,700 (+)Ensemblpanpan1.1panPan2
ATP2C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,097,831 - 28,233,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,066,639 - 28,235,215 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,071,244 - 28,206,384 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02328,573,616 - 28,742,803 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2328,573,627 - 28,743,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12328,270,690 - 28,439,119 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,360,695 - 28,495,909 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02328,610,117 - 28,745,760 (+)NCBIUU_Cfam_GSD_1.0
ATP2C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,438,615 - 1,612,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,461,562 - 1,580,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,118,899 - 1,270,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11559,189,075 - 59,348,684 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1559,188,225 - 59,311,709 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604132,207,172 - 32,372,825 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp2c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247306,865,197 - 7,001,378 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008622   ⟹   ENSSTOP00000007727
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365294,402,680 - 4,460,132 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042330   ⟹   ENSSTOP00000029348
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365294,361,424 - 4,474,436 (+)Ensembl
RefSeq Acc Id: XM_005327001   ⟹   XP_005327058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,340,419 - 4,474,870 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013359388   ⟹   XP_013214842
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,340,131 - 4,474,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013359389   ⟹   XP_013214843
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,601,298 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,361,833 - 4,474,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021727540   ⟹   XP_021583215
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,601,298 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,362,071 - 4,474,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021727541   ⟹   XP_021583216
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,601,298 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,361,833 - 4,474,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269803   ⟹   XP_040125737
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,601,104 - 67,714,373 (+)NCBI
RefSeq Acc Id: XM_040269804   ⟹   XP_040125738
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560267,579,736 - 67,697,318 (+)NCBI
RefSeq Acc Id: XP_005327058   ⟸   XM_005327001
- Peptide Label: isoform X1
- UniProtKB: I3MBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214842   ⟸   XM_013359388
- Peptide Label: isoform X2
- UniProtKB: I3MBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214843   ⟸   XM_013359389
- Peptide Label: isoform X3
- UniProtKB: A0A287D731 (UniProtKB/TrEMBL),   I3MBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583216   ⟸   XM_021727541
- Peptide Label: isoform X4
- UniProtKB: I3MBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583215   ⟸   XM_021727540
- Peptide Label: isoform X3
- UniProtKB: A0A287D731 (UniProtKB/TrEMBL),   I3MBZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125738   ⟸   XM_040269804
- Peptide Label: isoform X5
- UniProtKB: I3MBZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125737   ⟸   XM_040269803
- Peptide Label: isoform X3
- UniProtKB: A0A287D731 (UniProtKB/TrEMBL),   I3MBZ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000007727   ⟸   ENSSTOT00000008622
Ensembl Acc Id: ENSSTOP00000029348   ⟸   ENSSTOT00000042330

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008601 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008622.3 UniProtKB/TrEMBL
  ENSSTOT00000042330.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIA_PMR1 UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp2c1 ENTREZGENE
PANTHER CALCIUM-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR42861:SF2 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  HATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A287D731 ENTREZGENE, UniProtKB/TrEMBL
  I3MBZ1 ENTREZGENE, UniProtKB/TrEMBL