Calml4 (calmodulin like 4) - Rat Genome Database

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Gene: Calml4 (calmodulin like 4) Ictidomys tridecemlineatus
Analyze
Symbol: Calml4
Name: calmodulin like 4
RGD ID: 12688615
Description: ENCODES a protein that exhibits myosin head/neck binding (ortholog); INVOLVED IN brush border assembly (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN microvillus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calmodulin-like protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640110,210,102 - 110,222,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647128,058,176 - 28,067,442 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647128,058,165 - 28,067,463 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Calml4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640110,210,102 - 110,222,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647128,058,176 - 28,067,442 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647128,058,165 - 28,067,463 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALML4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381568,190,705 - 68,206,110 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1568,190,705 - 68,206,079 (-)EnsemblGRCh38hg38GRCh38
GRCh371568,483,043 - 68,498,448 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361566,270,097 - 66,285,502 (-)NCBINCBI36Build 36hg18NCBI36
Build 341566,270,479 - 66,285,502NCBI
Celera1545,367,956 - 45,383,362 (-)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1545,313,778 - 45,329,162 (-)NCBIHuRef
CHM1_11568,600,995 - 68,616,402 (-)NCBICHM1_1
T2T-CHM13v2.01566,009,455 - 66,024,859 (-)NCBIT2T-CHM13v2.0
Calml4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39962,765,068 - 62,783,203 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl962,765,362 - 62,783,203 (+)EnsemblGRCm39 Ensembl
GRCm38962,857,472 - 62,875,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl962,858,080 - 62,875,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37962,705,911 - 62,723,725 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36962,656,110 - 62,673,924 (+)NCBIMGSCv36mm8
Celera960,083,497 - 60,094,995 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.9NCBI
Calml4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8872,218,870 - 72,230,650 (+)NCBIGRCr8
mRatBN7.2863,323,426 - 63,335,234 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl863,323,351 - 63,335,234 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx868,838,506 - 68,850,149 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0867,110,960 - 67,122,603 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,980,956 - 64,992,609 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0867,753,279 - 67,765,359 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl867,753,279 - 67,765,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0867,482,026 - 67,494,105 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4867,007,122 - 67,018,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera862,738,382 - 62,750,146 (+)NCBICelera
Cytogenetic Map8q24NCBI
Calml4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554507,887,414 - 7,894,143 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554507,886,565 - 7,894,143 (+)NCBIChiLan1.0ChiLan1.0
CALML4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21657,444,352 - 57,460,549 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11561,618,194 - 61,634,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01547,140,272 - 47,155,700 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11565,409,732 - 65,424,852 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1565,409,732 - 65,424,852 (-)Ensemblpanpan1.1panPan2
CALML4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13032,234,879 - 32,244,321 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3032,235,091 - 32,240,008 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3032,169,539 - 32,179,258 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03032,430,743 - 32,440,471 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3032,430,780 - 32,435,698 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13032,359,011 - 32,368,754 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03032,420,957 - 32,430,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03032,666,809 - 32,676,532 (-)NCBIUU_Cfam_GSD_1.0
CALML4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1166,083,629 - 166,099,593 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11166,089,583 - 166,099,794 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CALML4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12615,278,349 - 15,291,934 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048126,176,796 - 126,188,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calml4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247814,882,136 - 4,888,358 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247814,880,142 - 4,892,829 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015535   ⟹   ENSSTOP00000013905
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647128,058,176 - 28,067,442 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000038256   ⟹   ENSSTOP00000032016
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647128,058,359 - 28,067,401 (-)Ensembl
RefSeq Acc Id: XM_005316731   ⟹   XP_005316788
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640110,210,102 - 110,222,226 (-)NCBI
SpeTri2.0NW_00493647128,058,165 - 28,067,463 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275808   ⟹   XP_040131742
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640110,210,102 - 110,222,226 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005316788 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131742 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013905.3
  ENSSTOP00000032016.1
GenBank Protein KAG3262150 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316788   ⟸   XM_005316731
- Peptide Label: isoform X1
- UniProtKB: I3MPW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131742   ⟸   XM_040275808
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000032016   ⟸   ENSSTOT00000038256
RefSeq Acc Id: ENSSTOP00000013905   ⟸   ENSSTOT00000015535
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015539 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015535.3 UniProtKB/TrEMBL
  ENSSTOT00000038256.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Calml4 ENTREZGENE
PANTHER CALMODULIN-LIKE PROTEIN 4 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287DES3_ICTTR UniProtKB/TrEMBL
  I3MPW6 ENTREZGENE, UniProtKB/TrEMBL