Gpr148 (G protein-coupled receptor 148)

Gene: Gpr148 (G protein-coupled receptor 148) Ictidomys tridecemlineatus

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Symbol:

Gpr148

Name:

G protein-coupled receptor 148

RGD ID:

12688581

Description:

ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); schizophrenia (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable G-protein coupled receptor 148

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	100,420,654 - 100,421,718 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936469	41,196,002 - 41,197,066 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Gpr148
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	100,420,654 - 100,421,718 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936469	41,196,002 - 41,197,066 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPR148
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	130,729,070 - 130,730,336 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	130,729,070 - 130,730,336 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	131,486,643 - 131,487,909 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	131,203,193 - 131,204,379 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	125,085,792 - 125,087,058 (-)	NCBI		Celera
Cytogenetic Map	2	q21.1	NCBI
HuRef	2	123,559,828 - 123,561,094 (+)	NCBI		HuRef
CHM1_1	2	131,490,634 - 131,491,900 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	131,163,223 - 131,164,489 (+)	NCBI		T2T-CHM13v2.0

Gpr148
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955459	227,998 - 237,053 (+)	NCBI	ChiLan1.0	ChiLan1.0

GPR148
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	44,910,869 - 44,912,135 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	44,925,844 - 44,927,110 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	29,403,180 - 29,404,434 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	131,488,078 - 131,490,572 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	131,489,394 - 131,490,437 (+)	Ensembl	panpan1.1		panPan2

GPR148
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	20,432,076 - 20,433,807 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
ROS_Cfam_1.0	19	21,733,597 - 21,752,987 (+)	NCBI		ROS_Cfam_1.0
UU_Cfam_GSD_1.0	19	21,676,397 - 21,695,774 (+)	NCBI		UU_Cfam_GSD_1.0

GPR148
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	56,994,691 - 57,001,516 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	156,747,880 - 156,752,332 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPR148
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666037	377,476 - 381,956 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpr148
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624732	14,740,058 - 14,741,237 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005315951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005315951 ⟹ XP_005316008

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	100,420,654 - 100,421,718 (-)	NCBI
SpeTri2.0	NW_004936469	41,196,002 - 41,197,066 (+)	NCBI

Sequence:

show sequence

ATGCTGGCATCCTGCCCCTTGGCCACTACGACCTGGCCAGATCCAGTCCAGCTCTTCAGCAAGA
CACTCTGCACTCCCCAGGCAGCCAGTAACACCTCCCAGGGCTTCAGGGACATTAGAGTACCCAT
CTCCGGGCTGCGCTGGCTCTTCCTTCCCTCTAGTCTACTGATGGTGGCCACACTGGCCCTGAGC
CCCCTGATGCTGGTGACCATCCTGCGGAGCCAGAGGCTGAGGCATCAGCCCCAGTACCTGCTGC
TGGCCAACATCCTGCTCTCAGATCTTGCCTACATTTTCTTGCATACACTCATCTCCTCCAGCAG
CCTGAGTGGCTGGGAGCTGGGCCGCATCGTCTGCGGCATCCTAAGGGATGCTGTCTTTGCTTCC
TATACTAGCACCATCCTGTCCTTCACAGCCACTGTGCTGCACACCTACCTGGCTGTTACTCATC
CTCTGCGCTACCTCTCCTTCGTGTCTGGCAGAGCTGCCAGGAAGACAGTGGCCCTCATCTGGCT
GGTGGCCTGCATCTTCCCCACATTTCTCCTTTGGTTTAGCAAGCAGCAGGATGCCAGTCTGGAG
AAACAAGACACCTCCTGCATCCTGCCACTAGGCCTGGGCACTGAGCAGAGCCGTGGCACCTTGG
TCACTGTCACCCACACCTCCATAGTGTGCATTCTCTTTCTGTGCACAGCTCTCATTATCTACTG
CTTCTGGAAGATTTATGCAGAGGTCAGGCCTTCAGGCATCTGCACACAAGGCTATTCCCGGGCC
AGAGGTACCCTGCTAATCCACATGGTGCTGATCACACTGTATGTAGGCACAGGGGTGGTATTCT
CCCTGGACATCATGCTGACCAAGTACCACCACATTGGTTCCAGCACCCATGCATGGCTCCTGGC
AGCCAACAGTGAGGTGCTCATGATGCTGCCCCGTGCCATGCTCCCATACCTGTACATGATTCGC
TACCGCCAGCTGCTAGGGGTAGTCCGAAACCACTTCTCACCCAGGAGGCATGGAGACATTTTTA
CCATTTTCCAGAACTACGAGGTCCACAATCTGGCAAGCTAA

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Protein Sequences


Protein RefSeqs	XP_005316008	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3274360	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005316008 ⟸ XM_005315951

- Sequence:

show sequence

MLASCPLATTTWPDPVQLFSKTLCTPQAASNTSQGFRDIRVPISGLRWLFLPSSLLMVATLALS
PLMLVTILRSQRLRHQPQYLLLANILLSDLAYIFLHTLISSSSLSGWELGRIVCGILRDAVFAS
YTSTILSFTATVLHTYLAVTHPLRYLSFVSGRAARKTVALIWLVACIFPTFLLWFSKQQDASLE
KQDTSCILPLGLGTEQSRGTLVTVTHTSIVCILFLCTALIIYCFWKIYAEVRPSGICTQGYSRA
RGTLLIHMVLITLYVGTGVVFSLDIMLTKYHHIGSSTHAWLLAANSEVLMMLPRAMLPYLYMIR
YRQLLGVVRNHFSPRRHGDIFTIFQNYEVHNLAS

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Gpr148	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar