Bptf (bromodomain PHD finger transcription factor) - Rat Genome Database

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Gene: Bptf (bromodomain PHD finger transcription factor) Ictidomys tridecemlineatus
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Symbol: Bptf
Name: bromodomain PHD finger transcription factor
RGD ID: 12687991
Description: ENCODES a protein that exhibits ATPase, acting on DNA (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); brain development (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN histone modification pathway; ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); autistic disorder (ortholog); FOUND IN cell body (ortholog); chromatin (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nucleosome-remodeling factor subunit BPTF
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,797,668 - 13,932,702 (+)NCBI
SpeTri2.0NW_0049365415,261,899 - 5,396,930 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Bptf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,797,668 - 13,932,702 (+)NCBI
SpeTri2.0NW_0049365415,261,899 - 5,396,930 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPTF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1767,825,503 - 67,984,378 (+)EnsemblGRCh38hg38GRCh38
GRCh381767,825,503 - 67,984,378 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371765,821,619 - 65,980,494 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361763,252,242 - 63,410,956 (+)NCBINCBI36hg18NCBI36
Build 341763,252,241 - 63,410,954NCBI
Celera1762,393,834 - 62,548,958 (+)NCBI
Cytogenetic Map17q24.2NCBI
HuRef1761,206,522 - 61,365,041 (+)NCBIHuRef
CHM1_11765,885,748 - 66,044,414 (+)NCBICHM1_1
Bptf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,923,907 - 107,022,982 (-)NCBIGRCm39mm39
GRCm39 Ensembl11106,923,907 - 107,022,953 (-)Ensembl
GRCm3811107,033,081 - 107,132,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,033,081 - 107,132,127 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711106,894,395 - 106,993,236 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611106,849,170 - 106,948,012 (-)NCBImm8
Celera11118,766,552 - 118,865,802 (-)NCBICelera
Cytogenetic Map11E1NCBI
Bptf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21091,980,279 - 92,082,731 (-)NCBI
Rnor_6.0 Ensembl1095,250,294 - 95,349,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01095,248,573 - 95,350,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01094,988,086 - 95,067,768 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41096,391,087 - 96,402,832 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11096,410,231 - 96,583,938 (-)NCBI
Celera1090,646,576 - 90,725,664 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Bptf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,990,833 - 7,086,721 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,990,816 - 7,088,751 (+)NCBIChiLan1.0ChiLan1.0
BPTF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11766,955,717 - 67,111,521 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1766,956,594 - 67,109,428 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01761,759,241 - 61,917,343 (+)NCBIMhudiblu_PPA_v0panPan3
BPTF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1912,586,107 - 12,703,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl912,590,333 - 12,703,422 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha913,484,380 - 13,638,851 (-)NCBI
ROS_Cfam_1.0914,247,259 - 14,401,817 (-)NCBI
UMICH_Zoey_3.1913,196,405 - 13,355,318 (-)NCBI
UNSW_CanFamBas_1.0914,183,864 - 14,337,935 (+)NCBI
UU_Cfam_GSD_1.0914,182,366 - 14,336,917 (+)NCBI
BPTF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1214,112,643 - 14,255,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11214,112,943 - 14,254,810 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21214,465,944 - 14,560,873 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPTF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11653,478,706 - 53,634,617 (-)NCBI
ChlSab1.1 Ensembl1653,478,464 - 53,634,183 (-)Ensembl
Bptf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624870489,359 - 626,677 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021728418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021728418   ⟹   XP_021584093
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560213,797,668 - 13,932,702 (+)NCBI
SpeTri2.0NW_0049365415,261,899 - 5,396,930 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021584093 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021584093   ⟸   XM_021728418
- Sequence:
Protein Domains
Bromo   DDT   PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013363 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011981 UniProtKB/TrEMBL
  ENSSTOP00000024533 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000026991 UniProtKB/TrEMBL
  ENSSTOP00000029979 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013374 UniProtKB/TrEMBL
  ENSSTOT00000031827 UniProtKB/TrEMBL
  ENSSTOT00000032467 UniProtKB/TrEMBL
  ENSSTOT00000039511 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro BPTF UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DDT_dom UniProtKB/TrEMBL
  WHIM2_dom UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Bptf ENTREZGENE
PANTHER PTHR45975 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  WSD UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A287CTD4_ICTTR UniProtKB/TrEMBL
  A0A287D075_ICTTR UniProtKB/TrEMBL
  A0A287D8W5_ICTTR UniProtKB/TrEMBL
  I3MKV7_ICTTR UniProtKB/TrEMBL