Rexo1 (RNA exonuclease 1 homolog) - Rat Genome Database

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Gene: Rexo1 (RNA exonuclease 1 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: Rexo1
Name: RNA exonuclease 1 homolog
RGD ID: 12687856
Description: ENCODES a protein that exhibits exonuclease activity (inferred); nucleic acid binding (inferred); ASSOCIATED WITH cyclic hematopoiesis (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear body (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,791,651 - 216,804,255 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,032,196 - 1,042,655 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,030,528 - 1,042,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rexo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,791,651 - 216,804,255 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,032,196 - 1,042,655 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,030,528 - 1,042,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REXO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,815,248 - 1,848,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,815,248 - 1,848,483 (-)EnsemblGRCh38hg38GRCh38
GRCh37191,815,247 - 1,848,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,766,245 - 1,799,452 (-)NCBINCBI36Build 36hg18NCBI36
Build 34191,766,246 - 1,799,450NCBI
Celera191,749,329 - 1,782,534 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,586,749 - 1,620,125 (-)NCBIHuRef
CHM1_1191,814,848 - 1,848,081 (-)NCBICHM1_1
T2T-CHM13v2.0191,786,564 - 1,819,798 (-)NCBIT2T-CHM13v2.0
Rexo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,376,759 - 80,400,624 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,376,756 - 80,397,394 (-)EnsemblGRCm39 Ensembl
GRCm381080,540,926 - 80,564,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,540,922 - 80,561,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,003,671 - 80,024,305 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,944,789 - 79,964,671 (-)NCBIMGSCv36mm8
Celera1081,558,724 - 81,579,360 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Rexo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,804,740 - 9,824,717 (+)NCBIGRCr8
mRatBN7.279,154,050 - 9,174,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,154,061 - 9,173,454 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,032,341 - 12,051,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,907,855 - 13,927,217 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,773,869 - 11,793,238 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,022,268 - 12,041,660 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,022,285 - 12,041,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,189,793 - 12,209,185 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,664,432 - 10,683,824 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,678,737 - 10,683,240 (+)NCBI
Celera77,336,164 - 7,355,554 (+)NCBICelera
Cytogenetic Map7q11NCBI
Rexo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,194,521 - 6,220,031 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,194,380 - 6,219,907 (+)NCBIChiLan1.0ChiLan1.0
REXO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2206,185,812 - 6,219,318 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,416,761 - 5,450,291 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019813,643 - 847,137 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,795,604 - 1,809,438 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,796,434 - 1,813,387 (-)Ensemblpanpan1.1panPan2
REXO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,117,756 - 57,141,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,130,460 - 57,140,889 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,910,900 - 56,934,311 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,849,062 - 57,872,844 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2057,849,077 - 57,872,844 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12056,906,644 - 56,930,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,385,885 - 57,409,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,587,552 - 57,611,124 (+)NCBIUU_Cfam_GSD_1.0
REXO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl276,693,796 - 76,718,394 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1276,694,269 - 76,719,026 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,193,305 - 77,217,427 (+)NCBISscrofa10.2Sscrofa10.2susScr3
REXO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,605,913 - 1,638,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,604,929 - 1,638,468 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660817,183,835 - 7,217,069 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rexo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,948,568 - 6,972,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,948,422 - 6,973,588 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000003252   ⟹   ENSSTOP00000002903
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365881,032,196 - 1,042,655 (-)Ensembl
RefSeq Acc Id: XM_013361394   ⟹   XP_013216848
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118216,791,653 - 216,804,255 (+)NCBI
SpeTri2.0NW_0049365881,030,528 - 1,042,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021730841   ⟹   XP_021586516
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118216,791,651 - 216,804,255 (+)NCBI
SpeTri2.0NW_0049365881,030,528 - 1,042,727 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013216848 (Get FASTA)   NCBI Sequence Viewer  
  XP_021586516 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002903.3
GenBank Protein KAG3280806 (Get FASTA)   NCBI Sequence Viewer  
  KAG3280807 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013216848   ⟸   XM_013361394
- Peptide Label: isoform X2
- UniProtKB: I3M1X9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586516   ⟸   XM_021730841
- Peptide Label: isoform X1
- UniProtKB: I3M1X9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000002903   ⟸   ENSSTOT00000003252
Protein Domains
Exonuclease


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003257 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003252.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
InterPro EloA-BP1 UniProtKB/TrEMBL
  Exonuclease_RNaseT/DNA_pol3 UniProtKB/TrEMBL
  REX1-like_exo UniProtKB/TrEMBL
  REXO1/3/4-like UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
NCBI Gene Rexo1 ENTREZGENE
PANTHER RNA EXONUCLEASE 1 HOMOLOG UniProtKB/TrEMBL
  RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED UniProtKB/TrEMBL
Pfam EloA-BP1 UniProtKB/TrEMBL
SMART EXOIII UniProtKB/TrEMBL
Superfamily-SCOP SSF53098 UniProtKB/TrEMBL
UniProt I3M1X9 ENTREZGENE, UniProtKB/TrEMBL