Rabgef1 (RAB guanine nucleotide exchange factor 1) - Rat Genome Database

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Gene: Rabgef1 (RAB guanine nucleotide exchange factor 1) Ictidomys tridecemlineatus
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Symbol: Rabgef1
Name: RAB guanine nucleotide exchange factor 1
RGD ID: 12687594
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of inflammatory response (ortholog); negative regulation of interleukin-6 production (ortholog); negative regulation of Kit signaling pathway (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RAB guanine nucleotide exchange factor 1, transcript variant X1; RAB guanine nucleotide exchange factor 1, transcript variant X2; rab5 GDP/GTP exchange factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,595,855 - 126,631,497 (+)NCBI
SpeTri2.0NW_0049365437,405,070 - 7,447,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Rabgef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,595,855 - 126,631,497 (+)NCBI
SpeTri2.0NW_0049365437,405,070 - 7,447,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABGEF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl766,682,164 - 66,811,464 (+)EnsemblGRCh38hg38GRCh38
GRCh38766,654,567 - 66,811,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37766,119,554 - 66,276,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,843,078 - 65,913,886 (+)NCBINCBI36hg18NCBI36
Build 34765,649,869 - 65,720,596NCBI
Celera765,839,772 - 65,910,585 (-)NCBI
Cytogenetic Map7q11.21NCBI
HuRef762,390,634 - 62,461,448 (+)NCBIHuRef
CHM1_1766,300,937 - 66,371,742 (+)NCBICHM1_1
CRA_TCAGchr7v2765,543,205 - 65,614,013 (+)NCBI
Rabgef1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,200,644 - 130,243,178 (+)NCBIGRCm39mm39
GRCm39 Ensembl5130,200,639 - 130,243,183 (+)Ensembl
GRCm385130,171,819 - 130,214,342 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,171,798 - 130,214,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,663,050 - 130,690,207 (+)NCBIGRCm37mm9NCBIm37
MGSCv365130,471,883 - 130,499,040 (+)NCBImm8
Celera5127,200,117 - 127,227,286 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
Rabgef1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21226,459,190 - 26,503,790 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1226,460,175 - 26,503,744 (-)Ensembl
Rnor_6.01229,960,132 - 30,004,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,961,120 - 29,988,959 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,897,731 - 31,942,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,497,545 - 27,525,385 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11227,360,759 - 27,388,619 (-)NCBI
Celera1228,174,408 - 28,202,245 (-)NCBICelera
Cytogenetic Map12q12NCBI
Rabgef1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,674,469 - 8,718,821 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,648,925 - 8,716,337 (+)NCBIChiLan1.0ChiLan1.0
LOC100993573
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1773,775,028 - 73,850,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl773,775,002 - 73,850,446 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0759,268,053 - 59,344,555 (-)NCBIMhudiblu_PPA_v0panPan3
RABGEF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,064,694 - 1,159,906 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,064,655 - 1,179,547 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,815,410 - 2,859,509 (+)NCBI
ROS_Cfam_1.06896,809 - 965,086 (+)NCBI
UMICH_Zoey_3.16831,713 - 899,916 (+)NCBI
UNSW_CanFamBas_1.06833,940 - 901,951 (+)NCBI
UU_Cfam_GSD_1.061,005,706 - 1,073,713 (+)NCBI
RABGEF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,308,112 - 16,376,587 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,308,112 - 16,376,604 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,560,377 - 16,628,874 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABGEF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,307,462 - 2,385,032 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607014,241,991 - 14,288,400 (-)NCBIVero_WHO_p1.0
Rabgef1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247408,624,231 - 8,688,747 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005328546   ⟹   XP_005328603
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344126,595,866 - 126,631,497 (+)NCBI
SpeTri2.0NW_0049365437,405,070 - 7,447,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005328547   ⟹   XP_005328604
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344126,595,855 - 126,631,497 (+)NCBI
SpeTri2.0NW_0049365437,405,329 - 7,440,719 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328603 (Get FASTA)   NCBI Sequence Viewer  
  XP_005328604 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3259741 (Get FASTA)   NCBI Sequence Viewer  
  KAG3259742 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328604   ⟸   XM_005328547
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005328603   ⟸   XM_005328546
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003192 ENTREZGENE
Ensembl Protein ENSSTOP00000002853 ENTREZGENE
NCBI Gene Rabgef1 ENTREZGENE