Pex11g (peroxisomal biogenesis factor 11 gamma) - Rat Genome Database

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Gene: Pex11g (peroxisomal biogenesis factor 11 gamma) Ictidomys tridecemlineatus
Analyze
Symbol: Pex11g
Name: peroxisomal biogenesis factor 11 gamma
RGD ID: 12687287
Description: INVOLVED IN peroxisome fission (inferred); regulation of peroxisome size (inferred); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 39 (ortholog); mucolipidosis type IV (ortholog); FOUND IN membrane (inferred); peroxisomal membrane (inferred); peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisomal membrane protein 11C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,254,586 - 213,260,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,574,612 - 4,580,222 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,574,220 - 4,580,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pex11g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,254,586 - 213,260,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,574,612 - 4,580,222 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,574,220 - 4,580,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX11G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,476,875 - 7,494,977 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,476,875 - 7,497,449 (-)EnsemblGRCh38hg38GRCh38
GRCh37197,541,761 - 7,554,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,447,761 - 7,459,905 (-)NCBINCBI36Build 36hg18NCBI36
Build 34197,447,760 - 7,459,905NCBI
Celera197,414,267 - 7,426,410 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,213,120 - 7,225,287 (-)NCBIHuRef
CHM1_1197,541,770 - 7,553,932 (-)NCBICHM1_1
T2T-CHM13v2.0197,477,542 - 7,495,642 (-)NCBIT2T-CHM13v2.0
Pex11g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,507,105 - 3,517,648 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,507,105 - 3,517,680 (-)EnsemblGRCm39 Ensembl
GRCm3883,457,105 - 3,467,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,457,105 - 3,467,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,458,817 - 3,467,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,458,817 - 3,467,648 (-)NCBIMGSCv36mm8
Celera83,684,615 - 3,693,520 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Pex11g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,301,461 - 6,329,741 (-)NCBIGRCr8
mRatBN7.2121,502,606 - 1,532,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,503,646 - 1,512,585 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,169,652 - 2,176,746 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,793,220 - 2,800,314 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,565,259 - 1,572,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,000,426 - 2,007,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,000,427 - 2,007,516 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,163,473 - 4,170,562 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,702,761 - 2,709,897 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1122,702,809 - 2,709,898 (+)NCBI
Celera123,361,537 - 3,368,616 (-)NCBICelera
Cytogenetic Map12p12NCBI
Pex11g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,737,560 - 1,743,854 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,737,560 - 1,743,854 (+)NCBIChiLan1.0ChiLan1.0
PEX11G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,141,999 - 12,160,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,260,147 - 11,278,662 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0196,763,676 - 6,782,075 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,626,021 - 7,639,174 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,626,021 - 7,639,174 (-)Ensemblpanpan1.1panPan2
PEX11G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,284,674 - 52,292,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,282,762 - 52,292,888 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,088,882 - 52,097,092 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02052,814,258 - 52,822,485 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2052,812,350 - 52,823,395 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,017,834 - 52,026,046 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02052,461,409 - 52,469,620 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,692,339 - 52,700,552 (-)NCBIUU_Cfam_GSD_1.0
PEX11G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,639,301 - 71,652,903 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,639,289 - 71,649,445 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,166,805 - 72,174,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEX11G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,975,467 - 7,000,937 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,975,792 - 6,984,350 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666081883,769 - 895,883 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex11g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624828606,142 - 612,330 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624828606,356 - 612,121 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009757   ⟹   ENSSTOP00000008751
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365884,574,612 - 4,580,222 (-)Ensembl
RefSeq Acc Id: XM_005332101   ⟹   XP_005332158
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118213,254,586 - 213,260,563 (+)NCBI
SpeTri2.0NW_0049365884,574,220 - 4,580,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021730946   ⟹   XP_021586621
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118213,254,689 - 213,260,563 (+)NCBI
SpeTri2.0NW_0049365884,574,220 - 4,580,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040290563   ⟹   XP_040146497
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118213,254,689 - 213,260,563 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005332158 (Get FASTA)   NCBI Sequence Viewer  
  XP_021586621 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146497 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008751.1
Reference Protein Sequences
RefSeq Acc Id: XP_005332158   ⟸   XM_005332101
- Peptide Label: isoform X1
- UniProtKB: I3ME58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586621   ⟸   XM_021730946
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040146497   ⟸   XM_040290563
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000008751   ⟸   ENSSTOT00000009757


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009764 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009757.2 UniProtKB/TrEMBL
InterPro PEX11 UniProtKB/TrEMBL
  PEX11C_met UniProtKB/TrEMBL
NCBI Gene Pex11g ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN 11C UniProtKB/TrEMBL
  PTHR20990 UniProtKB/TrEMBL
Pfam PEX11 UniProtKB/TrEMBL
UniProt I3ME58 ENTREZGENE, UniProtKB/TrEMBL