Krr1 (KRR1 small subunit processome component homolog)

Gene: Krr1 (KRR1 small subunit processome component homolog) Ictidomys tridecemlineatus

Analyze

Symbol:

Krr1

Name:

KRR1 small subunit processome component homolog

RGD ID:

12685671

Description:

ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN ribosomal small subunit biogenesis (inferred); ribosome biogenesis (inferred); rRNA processing (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromosome (inferred); intercellular bridge (inferred); nucleolus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

KRR1, small subunit processome component homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	41,767,568 - 41,779,570 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936568	3,949,877 - 3,960,882 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936568	3,949,593 - 3,960,721 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosomal small subunit biogenesis (IEA)

ribosome biogenesis (IEA)

rRNA processing (IEA)

Cellular Component

chromosome (IEA)

intercellular bridge (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

ribonucleoprotein complex (IEA)

small-subunit processome (IEA)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Krr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	41,767,568 - 41,779,570 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936568	3,949,877 - 3,960,882 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936568	3,949,593 - 3,960,721 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KRR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	75,490,863 - 75,511,609 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	75,490,863 - 75,511,636 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	75,884,643 - 75,905,389 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	74,177,686 - 74,191,685 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	74,177,685 - 74,191,659	NCBI
Celera	12	75,558,782 - 75,572,781 (-)	NCBI		Celera
Cytogenetic Map	12	q21.2	NCBI
HuRef	12	72,941,052 - 72,955,049 (-)	NCBI		HuRef
CHM1_1	12	75,856,837 - 75,870,833 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	75,465,553 - 75,486,296 (-)	NCBI		T2T-CHM13v2.0

Krr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	111,808,600 - 111,824,335 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	111,808,569 - 111,824,337 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	111,972,695 - 111,988,430 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	111,972,664 - 111,988,432 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	111,409,751 - 111,425,486 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	111,376,894 - 111,391,193 (+)	NCBI		MGSCv36	mm8
Celera	10	113,918,628 - 113,934,364 (+)	NCBI		Celera
Cytogenetic Map	10	D1- D2	NCBI
cM Map	10	59.97	NCBI

Krr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	49,361,794 - 49,374,222 (+)	NCBI		GRCr8
mRatBN7.2	7	47,475,557 - 47,486,996 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	47,475,557 - 47,486,985 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	49,377,636 - 49,389,072 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	51,580,718 - 51,592,154 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	51,358,539 - 51,369,975 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	54,756,043 - 54,767,477 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	54,756,043 - 54,767,471 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	54,780,329 - 54,791,763 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	51,069,927 - 51,081,361 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	51,090,511 - 51,101,428 (+)	NCBI
Celera	7	44,272,748 - 44,284,182 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

Krr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	14,851,602 - 14,864,985 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	14,851,602 - 14,864,838 (-)	NCBI	ChiLan1.0	ChiLan1.0

KRR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	83,537,828 - 83,553,806 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	83,534,220 - 83,550,115 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	73,021,700 - 73,037,582 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	75,874,714 - 75,889,408 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	75,874,714 - 75,889,408 (-)	Ensembl	panpan1.1		panPan2

LOC475405
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	18,694,162 - 18,705,566 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	18,538,751 - 18,705,519 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	19,178,245 - 19,189,654 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	19,031,231 - 19,042,634 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	19,031,557 - 19,042,569 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	18,634,651 - 18,646,028 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	18,690,669 - 18,702,072 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	18,819,551 - 18,830,949 (-)	NCBI		UU_Cfam_GSD_1.0

KRR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	38,809,854 - 38,821,731 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	38,809,748 - 38,821,782 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	42,373,115 - 42,385,143 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KRR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	71,105,372 - 71,118,039 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	71,105,645 - 71,118,040 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	174,446,186 - 174,458,757 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Krr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624750	22,542,225 - 22,555,950 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000003620 ⟹ ENSSTOP00000003243

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936568	3,949,877 - 3,960,882 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000040318 ⟹ ENSSTOP00000032208

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936568	3,949,986 - 3,960,682 (-)	Ensembl

RefSeq Acc Id:

XM_005330434 ⟹ XP_005330491

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	41,767,568 - 41,779,570 (+)	NCBI
SpeTri2.0	NW_004936568	3,949,593 - 3,960,721 (-)	NCBI

Sequence:

show sequence

AACAGCTTCATTTCCGGTACCACCGGAAGCAATTGGAAAATGGCGTCTTCTTTGCCGATCGGTC
CCGTTCCAGCAGCTGGGAAAAGTGAATTTCGCAACCAGAAGTCAAAGCCGGAGAGCAAAGATGA
ATCGGAGCTCCTCACTGTTCCTGATGGTTGGAAGGAGCCAGCTTTTTCTAAAGAGGACAATCCG
AGGGGACTCTTGGAAGAGAGCAGTTTTGCAACTTTGTTTCCCAAATATAGAGAGGCTTACTTGA
AAGAGTGTTGGCCTTTGGTGCAGAAAGCCTTGAATGAACATCATGTTAAAGCAACCCTGGACCT
GATCGAGGGCAGTATGACTGTTTGTACTACAAAGAAGACTTTTGACCCATATATCATCATTAGG
GCCAGAGACCTAATAAAACTGTTGGCAAGGAGTGTTTCATTTGAACAGGCAGTACGAATTCTTC
AGGATGATATCGCGTGTGATATCATTAAAATAGGTTCCTTAGTAAGAAATAAGGAAAGATTTGT
AAAAAGAAGACAACGGCTTATTGGTCCAAAAGGATCTACATTAAAGGCATTGGAACTCCTAACA
AACTGTTACATTATGGTTCAGGGAAATACAGTTTCAGCCATTGGACCTTTTAGTGGCTTAAAAG
AGGTTCGAAAAGTAGTTCTAGATACTATGAAGAATATTCATCCCATTTATAACATTAAAACCTT
AATGATTAAACGGGAATTGGCAAAAGATTCTGAATTACGATCACAAAGTTGGGAAAGATTCTTG
CCACACTTCAAACACAAAAATGTGAATAAGCGCAAGGAACCGAAGAAGAAAACTGTTAAGAAAG
CATACACGCCATTTCCACCACCACAGCCAGAAAGTCAGATTGATAAAGAATTGGCTAGTGGTGA
ATACTTTTTGAAAGCGAATCAAAAGAAGCGACAAAAAATGGAAGCAATCAAGGCTAAACAAGCA
GAAGCTCTCAGTAAGAGACAAGAGGAAAGAAACAAAGCATTTATTCCACCTAAAGAAAAAACAG
TTGTGAAACCTAAGGAAGCATCTACTGAAACTAAAATTGATGTGGCTGCCATCAAGGAGAAGGT
TAAGAAAGCAAAGAACAAGAAACTGGGAGCTCTTACAGCTGAAGAAGTTAAGCTTAAGGTGGAA
GCAGATGAAAAGAAAAAGAAGAAAAAAAAGTAACATTAAAAAAATAACCAAAACCCCCTAAACT
AGAATTTATAAAACTATCTCCTTTTGTAAAGGATTTTGAGATATTAGGACATTAGTTGTCCTAT
GTGTGAGAAATAATATTTCTGAGTTTCATATAATAATATTCTTTATAAATATATTCTTGTGTAT
TTTGAAAAATTTTGTGCTAGAAAGTGCTATGTGTACATTGTACTTAATCAGGCAGGTTTTGCCT
AAGCATGAGTTTAGGAGTAACTTTTAGGTTTTTTTTTTATATATACATTTTTGGAACGTGACTA
TTGTAGTTTTTCATTAAATCCAAAGTCTGATGTCATTGGTTAGTTTTTAAACATAATCATGTCC
CAGCATTTGGTTTTGAGGAAAATAAATGCCAGTTTTTCAGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005330491	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003243.3
	ENSSTOP00000032208.1
GenBank Protein	KAG3291346	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005330491 ⟸ XM_005330434

- UniProtKB:

I3M2M2 (UniProtKB/TrEMBL), A0A287DF83 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSLPIGPVPAAGKSEFRNQKSKPESKDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLF
PKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVS
FEQAVRILQDDIACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSA
IGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPHFKHKNVNKRKE
PKKKTVKKAYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKRQEERNKA
FIPPKEKTVVKPKEASTETKIDVAAIKEKVKKAKNKKLGALTAEEVKLKVEADEKKKKKKK

hide sequence

RefSeq Acc Id:

ENSSTOP00000032208 ⟸ ENSSTOT00000040318

RefSeq Acc Id:

ENSSTOP00000003243 ⟸ ENSSTOT00000003620

Protein Domains

K Homology

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003620	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003620.3	UniProtKB/TrEMBL
	ENSSTOT00000040318.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1370.10	UniProtKB/TrEMBL
InterPro	KH_8	UniProtKB/TrEMBL
	KH_dom	UniProtKB/TrEMBL
	KH_dom_type_1_sf	UniProtKB/TrEMBL
	KRR1-like_KH1_euk	UniProtKB/TrEMBL
	KRR1-like_KH2	UniProtKB/TrEMBL
	KRR1-like_KH2_euk	UniProtKB/TrEMBL
	rRNA_assembly_KRR1	UniProtKB/TrEMBL
NCBI Gene	Krr1	ENTREZGENE
PANTHER	KRR1 SMALL SUBUNIT PROCESSOME COMPONENT HOMOLOG	UniProtKB/TrEMBL
	PTHR12581	UniProtKB/TrEMBL
Pfam	KH_8	UniProtKB/TrEMBL
	KRR1-like_KH2	UniProtKB/TrEMBL
PIRSF	KRR1	UniProtKB/TrEMBL
SMART	SM00322	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54791	UniProtKB/TrEMBL
UniProt	A0A287DF83	ENTREZGENE, UniProtKB/TrEMBL
	I3M2M2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-29	Krr1	KRR1 small subunit processome component homolog		KRR1, small subunit processome component homolog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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