Mapre1 (microtubule associated protein RP/EB family member 1) - Rat Genome Database

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Gene: Mapre1 (microtubule associated protein RP/EB family member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Mapre1
Name: microtubule associated protein RP/EB family member 1
RGD ID: 12685202
Description: ENCODES a protein that exhibits identical protein binding (ortholog); microtubule plus-end binding (ortholog); protein kinase binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); cell migration (ortholog); establishment of mitotic spindle orientation (ortholog); PARTICIPATES IN N-cadherin signaling pathway; ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); immunodeficiency-centromeric instability-facial anomalies syndrome 1 (ortholog); FOUND IN cell projection (ortholog); cell projection membrane (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microtubule-associated protein RP/EB family member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,153,341 - 171,176,673 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648519,577,859 - 19,608,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mapre1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,153,341 - 171,176,673 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648519,577,859 - 19,608,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAPRE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,819,777 - 32,850,405 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,819,954 - 32,850,405 (+)EnsemblGRCh38hg38GRCh38
GRCh372031,407,760 - 31,438,211 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,871,435 - 30,901,867 (+)NCBINCBI36Build 36hg18NCBI36
Build 342030,871,434 - 30,901,865NCBI
Celera2028,161,619 - 28,192,142 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,194,932 - 28,225,450 (+)NCBIHuRef
CHM1_12031,311,126 - 31,341,645 (+)NCBICHM1_1
T2T-CHM13v2.02034,546,449 - 34,577,086 (+)NCBIT2T-CHM13v2.0
Mapre1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,583,131 - 153,615,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,583,194 - 153,615,230 (+)EnsemblGRCm39 Ensembl
GRCm382153,741,287 - 153,773,317 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,741,274 - 153,773,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv372153,567,023 - 153,599,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,432,817 - 153,459,666 (+)NCBIMGSCv36mm8
Celera2159,584,963 - 159,618,551 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.95NCBI
Mapre1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,679,020 - 162,707,167 (+)NCBIGRCr8
mRatBN7.23142,218,846 - 142,246,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,212,955 - 142,246,983 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3146,121,016 - 146,148,942 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,704,836 - 154,732,763 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,445,110 - 152,473,044 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,221,346 - 149,249,469 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,221,377 - 149,249,273 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03155,599,578 - 155,627,687 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,120,532 - 144,148,856 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13144,030,965 - 144,040,482 (+)NCBI
Celera3140,960,310 - 140,988,053 (+)NCBICelera
Cytogenetic Map3q41NCBI
Mapre1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542228,346,495 - 28,358,513 (-)NCBIChiLan1.0ChiLan1.0
MAPRE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,506,879 - 38,537,472 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,499,835 - 38,530,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02029,103,963 - 29,134,439 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,222,155 - 30,252,440 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2030,222,155 - 30,252,440 (+)Ensemblpanpan1.1panPan2
MAPRE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,130,125 - 22,163,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,130,125 - 22,238,109 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,776,007 - 21,809,774 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,817,207 - 22,851,001 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,817,183 - 22,850,998 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,093,309 - 22,125,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,201,769 - 22,235,563 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,632,807 - 22,666,569 (+)NCBIUU_Cfam_GSD_1.0
MAPRE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,387,062 - 36,426,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,390,698 - 36,426,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,327,542 - 41,359,142 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAPRE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,191,848 - 37,225,454 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl237,205,654 - 37,223,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605089,679,921 - 89,713,248 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mapre1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248426,416,877 - 6,444,043 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040275427   ⟹   XP_040131361
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640171,153,341 - 171,176,673 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040131361 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3263083 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040131361   ⟸   XM_040275427


Additional Information

Database Acc Id Source(s)
NCBI Gene Mapre1 ENTREZGENE