Cfap221 (cilia and flagella associated protein 221) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cfap221 (cilia and flagella associated protein 221) Ictidomys tridecemlineatus
Analyze
Symbol: Cfap221
Name: cilia and flagella associated protein 221
RGD ID: 12684851
Description: ENCODES a protein that exhibits calmodulin binding (ortholog); INVOLVED IN cerebrospinal fluid circulation (ortholog); establishment of localization in cell (ortholog); mucociliary clearance (ortholog); ASSOCIATED WITH primary ciliary dyskinesia (ortholog); FOUND IN 9+2 motile cilium (ortholog); cytoplasm (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 221
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530390,777,338 - 90,875,398 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493646950,742,420 - 50,840,402 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cfap221
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530390,777,338 - 90,875,398 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493646950,742,420 - 50,840,402 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP221
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382119,544,449 - 119,660,323 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2119,544,432 - 119,662,251 (+)EnsemblGRCh38hg38GRCh38
GRCh372120,302,025 - 120,414,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,018,515 - 120,130,707 (+)NCBINCBI36Build 36hg18NCBI36
Celera2113,627,896 - 113,739,842 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2112,626,915 - 112,738,978 (+)NCBIHuRef
CHM1_12120,305,525 - 120,417,425 (+)NCBICHM1_1
T2T-CHM13v2.02119,977,951 - 120,093,833 (+)NCBIT2T-CHM13v2.0
Cfap221
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,851,070 - 119,934,624 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,851,071 - 119,924,964 (-)EnsemblGRCm39 Ensembl
GRCm381119,923,340 - 120,006,958 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,923,341 - 119,997,234 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,820,096 - 121,891,787 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,750,887 - 121,824,780 (-)NCBIMGSCv36mm8
Celera1122,583,062 - 122,654,709 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.54NCBI
Cfap221
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,599,322 - 33,669,721 (-)NCBIGRCr8
mRatBN7.21331,046,550 - 31,118,141 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1331,046,535 - 31,116,899 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01335,952,808 - 36,024,371 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,953,088 - 36,022,197 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01341,064,341 - 41,135,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,714,725 - 32,729,670 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1330,936,273 - 31,004,539 (-)NCBICelera
Cytogenetic Map13q11NCBI
Cfap221
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545910,086,111 - 10,192,821 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545910,070,827 - 10,192,411 (-)NCBIChiLan1.0ChiLan1.0
CFAP221
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21321,544,640 - 21,663,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B21,559,611 - 21,678,810 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B6,478,324 - 6,594,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,056,431 - 120,171,679 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B120,056,182 - 120,168,050 (+)Ensemblpanpan1.1panPan2
CFAP221
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11930,370,819 - 30,494,865 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1930,393,833 - 30,494,867 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,630,797 - 30,755,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,753,848 - 31,876,987 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,750,145 - 31,876,987 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11930,439,135 - 30,563,740 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,607,144 - 30,730,063 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,793,797 - 31,916,869 (-)NCBIUU_Cfam_GSD_1.0
CFAP221
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,585,488 - 31,685,630 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,585,043 - 31,685,867 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,097,857 - 36,154,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP221
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,666,903 - 10,780,316 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,666,906 - 10,779,914 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606111,906,843 - 12,020,959 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap221
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473225,407,189 - 25,595,504 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021722049   ⟹   XP_021577724
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530390,777,338 - 90,875,398 (+)NCBI
SpeTri2.0NW_00493646950,742,420 - 50,840,402 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294113   ⟹   XP_040150047
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530390,777,669 - 90,875,398 (+)NCBI
RefSeq Acc Id: XM_040294114   ⟹   XP_040150048
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530390,779,229 - 90,875,398 (+)NCBI
RefSeq Acc Id: XM_040294115   ⟹   XP_040150049
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530390,798,480 - 90,875,398 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021577724 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150047 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150048 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150049 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3274249 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021577724   ⟸   XM_021722049
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040150047   ⟸   XM_040294113
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040150048   ⟸   XM_040294114
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040150049   ⟸   XM_040294115
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Cfap221 ENTREZGENE