Itpr3 (inositol 1,4,5-trisphosphate receptor type 3) - Rat Genome Database

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Gene: Itpr3 (inositol 1,4,5-trisphosphate receptor type 3) Ictidomys tridecemlineatus
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Symbol: Itpr3
Name: inositol 1,4,5-trisphosphate receptor type 3
RGD ID: 12684725
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-release channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); calcium ion transport into cytosol (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH acrodermatitis (ortholog); autosomal dominant non-syndromic intellectual disability 5 (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN apical part of cell (ortholog); brush border (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,641,843 - 38,705,335 (+)NCBI
SpeTri2.0NW_00493647625,254,937 - 25,318,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Itpr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,641,843 - 38,705,335 (+)NCBI
SpeTri2.0NW_00493647625,254,937 - 25,318,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl633,620,365 - 33,696,574 (+)EnsemblGRCh38hg38GRCh38
GRCh38633,621,322 - 33,696,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37633,589,099 - 33,664,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,697,139 - 33,772,329 (+)NCBINCBI36hg18NCBI36
Build 34633,697,321 - 33,772,317NCBI
Celera635,143,559 - 35,218,741 (+)NCBI
Cytogenetic Map6p21.31NCBI
HuRef633,330,927 - 33,406,007 (+)NCBIHuRef
CHM1_1633,591,516 - 33,666,641 (+)NCBICHM1_1
Itpr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,275,976 - 27,341,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl1727,276,278 - 27,341,197 (+)Ensembl
GRCm381727,057,002 - 27,122,223 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,057,304 - 27,122,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv371727,194,249 - 27,259,168 (+)NCBIGRCm37mm9NCBIm37
MGSCv361726,785,125 - 26,849,812 (+)NCBImm8
Celera1727,593,736 - 27,658,505 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.68NCBI
Itpr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2205,136,968 - 5,202,339 (+)NCBI
Rnor_6.0 Ensembl205,646,097 - 5,711,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0205,645,894 - 5,711,702 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0207,711,508 - 7,775,357 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,292,430 - 5,357,502 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1205,292,656 - 5,357,727 (+)NCBI
Celera206,717,488 - 6,781,775 (+)NCBICelera
Cytogenetic Map20p12NCBI
Itpr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,055,805 - 2,106,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,055,782 - 2,106,709 (+)NCBIChiLan1.0ChiLan1.0
ITPR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1634,303,454 - 34,378,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,303,454 - 34,378,215 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0633,194,531 - 33,269,788 (+)NCBIMhudiblu_PPA_v0panPan3
ITPR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,970,613 - 3,050,254 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,805,187 - 3,048,938 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,997,254 - 3,066,455 (+)NCBI
ROS_Cfam_1.0123,313,122 - 3,382,514 (+)NCBI
UMICH_Zoey_3.1122,980,128 - 3,049,212 (+)NCBI
UNSW_CanFamBas_1.0123,061,183 - 3,130,533 (+)NCBI
UU_Cfam_GSD_1.0123,159,323 - 3,228,541 (+)NCBI
ITPR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,835,898 - 29,902,160 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,835,922 - 29,901,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,443,858 - 34,509,094 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,381,862 - 38,456,505 (-)NCBI
ChlSab1.1 Ensembl1738,381,743 - 38,456,499 (-)Ensembl
Vero_WHO_p1.0NW_02366604433,459,448 - 33,535,324 (+)NCBI
Itpr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475423,228,690 - 23,281,552 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005318804   ⟹   XP_005318861
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494638,641,843 - 38,705,335 (+)NCBI
SpeTri2.0NW_00493647625,254,937 - 25,318,316 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722016   ⟹   XP_021577691
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494638,641,843 - 38,705,335 (+)NCBI
SpeTri2.0NW_00493647625,254,944 - 25,318,216 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005732722
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494638,641,843 - 38,705,335 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005318861 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577691 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005318861   ⟸   XM_005318804
- Peptide Label: isoform X2
- UniProtKB: A0A287CW02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577691   ⟸   XM_021722016
- Peptide Label: isoform X1
- Sequence:
Protein Domains
MIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000825 ENTREZGENE
Ensembl Protein ENSSTOP00000025482 ENTREZGENE
NCBI Gene Itpr3 ENTREZGENE
UniProt A0A287CW02 ENTREZGENE