Shisal1 (shisa like 1) - Rat Genome Database

Name: Shisal1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Shisal1 (shisa like 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Shisal1

Name:

shisa like 1

RGD ID:

12684209

Description:

ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Kiaa1644; KIAA1644 ortholog; uncharacterized protein KIAA1644 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHISAL1 (shisa like 1)	NCBI	Ortholog
Mus musculus (house mouse):	Shisal1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Shisal1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shisal1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHISAL1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHISAL1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHISAL1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHISAL1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shisal1 (shisa like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	5,071,040 - 5,165,446 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936718	1,814,713 - 1,871,585 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936718	1,814,719 - 1,909,106 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Phelan-McDermid syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Shisal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	5,071,040 - 5,165,446 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936718	1,814,713 - 1,871,585 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936718	1,814,719 - 1,909,106 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHISAL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	44,243,665 - 44,331,714 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	44,243,665 - 44,312,951 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	44,639,545 - 44,708,831 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	42,970,890 - 43,040,064 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	28,553,938 - 28,622,910 (-)	NCBI		Celera
Cytogenetic Map	22	q13.31	NCBI
HuRef	22	27,592,548 - 27,661,699 (-)	NCBI		HuRef
CHM1_1	22	44,598,297 - 44,667,424 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	44,727,485 - 44,815,559 (-)	NCBI		T2T-CHM13v2.0

Shisal1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	84,263,404 - 84,367,061 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	84,263,404 - 84,331,298 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	84,379,203 - 84,482,860 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	84,379,203 - 84,447,097 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	84,209,633 - 84,277,527 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	84,206,969 - 84,274,882 (-)	NCBI		MGSCv36	mm8
Celera	15	86,511,838 - 86,580,070 (-)	NCBI		Celera
Cytogenetic Map	15	E2	NCBI
cM Map	15	39.78	NCBI

Shisal1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	117,388,210 - 117,491,539 (-)	NCBI		GRCr8
mRatBN7.2	7	115,506,947 - 115,611,518 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	115,509,035 - 115,575,449 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	125,339,153 - 125,408,029 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	125,340,475 - 125,407,806 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	63,332,052 - 63,399,644 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	122,414,803 - 122,504,388 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	111,811,273 - 111,927,731 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Shisal1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	29,084,441 - 29,139,804 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	29,084,441 - 29,185,524 (-)	NCBI	ChiLan1.0	ChiLan1.0

SHISAL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	54,079,842 - 54,169,182 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	56,772,568 - 56,861,401 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	25,143,156 - 25,229,040 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	43,327,572 - 43,385,092 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	43,333,730 - 43,385,092 (-)	Ensembl	panpan1.1		panPan2

SHISAL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	21,371,681 - 21,503,400 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	21,371,487 - 21,510,505 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	21,370,719 - 21,444,555 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	22,179,336 - 22,252,949 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	22,121,565 - 22,260,044 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	21,898,393 - 21,972,169 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	22,218,735 - 22,292,492 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	22,391,698 - 22,466,208 (+)	NCBI		UU_Cfam_GSD_1.0

SHISAL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	4,771,417 - 4,849,326 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	4,767,436 - 4,849,333 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	2,218,197 - 2,299,116 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHISAL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	26,755,029 - 26,832,855 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	26,755,829 - 26,833,072 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	98,598,236 - 98,653,444 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shisal1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	4,940,906 - 4,972,103 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	4,938,802 - 4,976,525 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000026431 ⟹ ENSSTOP00000021081

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936718	1,814,713 - 1,871,585 (-)	Ensembl

RefSeq Acc Id:

XM_005338590 ⟹ XP_005338647

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	5,071,040 - 5,165,446 (+)	NCBI
SpeTri2.0	NW_004936718	1,814,719 - 1,909,106 (-)	NCBI

Sequence:

show sequence

ACAGGCTCACGCCCAGAGGAGCTCCAACCTGGGACGAGCGGCACGGAGCGCGGCCAGGGGCTGC
TCCCCAGCACAGGCCCCGGGACGCCCAGAGCAGCTCCCCCAGGCCAGCCTCACCCTGCTGCTGG
ACAGTGACCAGCCTCCCACAGGCGGCGCTGCACGGATCGATGCCAGCCAAACGATGACCAGTTG
TGGCCCGCAGTCCCGGAACCGGCTCGCCCTGCTCCTGTCCCTGCTGTTCTCCGCAGTCTCCTCC
GCGCATTTCCGGGTCTGCGAGCCGTACACGGACCACAAGGGCCGCTACCACTTTGGCTTCCACT
GCCCGCGGCTCTCTGACAACAAAACCTTCCTCCTCTGCTGTCACCATAACAACACGGTCTTCAA
ATACTGCTGCAACGAGTCTGAGTTCCAGGCGGTGATGCAGGCGAACCTCTCGGCCAGCTCCGAG
GGCTACATGCACAACAACTACACGGCCCTGCTGGGGGTGTGGATCTACGGCTTCCTCGTGCTGC
TGCTGCTGCTGCTGGACCTGCTCTACTACTCGGCCATGAACTACGACGTCTGCCAGGTCTACCT
GGCGCGGTGGGGCCTGCAGGGCCGCTGGATGAAACAGGACCCCCGGCGCTGGGGGGGCCCTTCC
CGCGCCCCTCGGCCAGGGCCGCCGGCCCCGCAGCCCCAGCCTCCCCCGGGCTCCCAGCCGCCGG
CCCCCCAGGCTGTGCACACGCTGCGGGAAGATGCCCAGAGCCCACCGCTGATGTCCTTCCAGAG
CTCGTCTGCCTGAAAACCTTTTCGCCGTGCCTCAGGATGGGGGAGGTGACACCCAAAGCACCCG
GTGCAGCCTCCAAGGACAACTCGGACAGAGACGCCAAGAGGAGCCCAGGCGGAGGCAGCGGCAG
AGGAGGAGACGCCGTCGGTGCCCGAAACCCCCCTCCACGGACTTCTAGCATCAGGAGCAAACTC
AGGGCTGGGGGCCGGGGTGCAGGGGGGGTCCCGGGCCACCCGTCCGCAAGCAATAGTTCTCCCT
TGGGCTGGTGGCTTCCGAGGGTGACTCGTGGACTCGGGTGACAAGCACAGAGTGACCCTGGCCG
ACTTGAGCCAGAAGGGTTCCAGCCGGGGGTCCCACCCGGGGTCCACGCACCGAGGCCCCCTCAC
CTCTGCCCCCTCCTGTAGTGGCCCGGGGCCCGTGGTGTCCGACATCGGGTGTGAGTGTGAGTGT
GTGCGTGTGTGTGATCCAGGGTGTGTGTGTTTGTTCGTTGGGTTAGTTCTTACTGCGGTCCTCC
TGCAAGTCCTCTGATGGGCACAGGTCACCACGTGGCTGGGGTCCTGCCAGTGTCCTCCTCTAGG
GCCCGGGCTTCCTGCTGCAGTCAGCAGCAGGGTCCAGCTGGAGCTGGCCAGGTGTGAGGCCAGC
CTCAGTGCCTCAGGGGCCCTGGGGACTGGACAGTGCCAGCAGGTGGTTCTTAGGGACTCGTCCC
CACCACGGAATGGTAGGAGCCCGCCCCAGCTGGCCGTGTGGAGGCCGTCCACTGCCACACACAG
GAGCGGCTCGAGTGGGCAGGCTGCCGGGGCCACGTGGCCAGCAGGAGGTCAGCCCTCGGGCGCA
GAGACCCAAAGTGCTCCACAGCCCGGGGCCCGAGCGCCTCCCGCATGCCGCCCAGGGTCTCAGT
GCTCAGCAGGTTAAGCGCCTGCCCTGCTGGACCCTGTGCCGGGCACTGATGGGATGAGAGACGA
GCCGGGCCTGGGGTCTGAGAAACTCGTTGATCTTTGCAGACAGGGTGACGAGGCCAATGGAAAA
CCAGAGCGGAAGGTTCTAGAAGGTTCTAGAAATCCATCCACCTGAAGTTGGGACTTCCACGTAA
ACCTGTAACCTTTGCCCATAGAGCTCACCCTCACCACCCCCTGCCCTGCTGCTGCCCCGGGCAC
ACAGGGAAGAACAACGGGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005338647	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000021081.2
GenBank Protein	KAG3290767	(Get FASTA)	NCBI Sequence Viewer
	KAG3290768	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005338647 ⟸ XM_005338590

- UniProtKB:

I3N9N4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSCGPQSRNRLALLLSLLFSAVSSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFLLCCHHNN
TVFKYCCNESEFQAVMQANLSASSEGYMHNNYTALLGVWIYGFLVLLLLLLDLLYYSAMNYDVC
QVYLARWGLQGRWMKQDPRRWGGPSRAPRPGPPAPQPQPPPGSQPPAPQAVHTLREDAQSPPLM
SFQSSSA

hide sequence

RefSeq Acc Id:

ENSSTOP00000021081 ⟸ ENSSTOT00000026431

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029147	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000026431.2	UniProtKB/TrEMBL
InterPro	Shisa	UniProtKB/TrEMBL
NCBI Gene	Kiaa1644	ENTREZGENE
PANTHER	PROTEIN SHISA-LIKE-1	UniProtKB/TrEMBL
	PTHR31395	UniProtKB/TrEMBL
Pfam	Shisa	UniProtKB/TrEMBL
UniProt	I3N9N4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-10-17	Shisal1	shisa like 1	Kiaa1644	KIAA1644 ortholog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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