Hesx1 (HESX homeobox 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hesx1 (HESX homeobox 1) Ictidomys tridecemlineatus
Analyze
Symbol: Hesx1
Name: HESX homeobox 1
RGD ID: 12683197
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Combined Pituitary Hormone Deficiency, 1 (ortholog); Combined Pituitary Hormone Deficiency, 5 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: HESX homeobox 1, transcript variant X1; HESX homeobox 1, transcript variant X2; HESX homeobox 1, transcript variant X3; homeobox expressed in ES cells 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118174,407,622 - 174,433,673 (-)NCBI
SpeTri2.0NW_0049364737,545,982 - 7,572,222 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

References

Genomics

Comparative Map Data
Hesx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118174,407,622 - 174,433,673 (-)NCBI
SpeTri2.0NW_0049364737,545,982 - 7,572,222 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HESX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl357,197,838 - 57,227,606 (-)EnsemblGRCh38hg38GRCh38
GRCh38357,197,838 - 57,227,643 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37357,231,866 - 57,261,643 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36357,207,265 - 57,209,320 (-)NCBINCBI36hg18NCBI36
Build 34357,207,264 - 57,209,320NCBI
Celera357,197,508 - 57,199,842 (-)NCBI
Cytogenetic Map3p14.3NCBI
HuRef357,280,999 - 57,283,330 (-)NCBIHuRef
CHM1_1357,182,092 - 57,184,428 (-)NCBICHM1_1
Hesx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391426,716,375 - 26,724,286 (+)NCBIGRCm39mm39
GRCm39 Ensembl1426,716,373 - 26,724,286 (+)Ensembl
GRCm381426,994,419 - 27,002,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,994,416 - 27,002,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371427,813,548 - 27,815,512 (+)NCBIGRCm37mm9NCBIm37
MGSCv361425,827,246 - 25,829,210 (+)NCBImm8
Celera1423,240,571 - 23,242,535 (+)NCBICelera
Cytogenetic Map14A3NCBI
Hesx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2162,191,852 - 2,193,957 (+)NCBI
Rnor_6.0 Ensembl162,634,603 - 2,636,708 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0162,616,538 - 2,636,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0162,607,470 - 2,609,575 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,255,128 - 2,257,233 (+)NCBIRGSC3.4rn4RGSC3.4
Celera162,158,634 - 2,160,728 (+)NCBICelera
Cytogenetic Map16p16NCBI
Hesx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,955,575 - 6,956,991 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,955,575 - 6,956,991 (-)NCBIChiLan1.0ChiLan1.0
HESX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1358,341,955 - 58,370,338 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl358,341,965 - 58,370,347 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0357,131,419 - 57,161,205 (-)NCBIMhudiblu_PPA_v0panPan3
HESX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,193,813 - 33,197,226 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,195,123 - 33,196,601 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,121,173 - 33,124,583 (+)NCBI
ROS_Cfam_1.02033,466,082 - 33,469,492 (+)NCBI
UMICH_Zoey_3.12032,914,836 - 32,918,246 (+)NCBI
UNSW_CanFamBas_1.02033,273,435 - 33,276,845 (+)NCBI
UU_Cfam_GSD_1.02033,445,045 - 33,448,455 (+)NCBI
HESX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1339,046,465 - 39,088,875 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11339,046,961 - 39,088,926 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HESX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12218,517,067 - 18,546,882 (-)NCBI
Vero_WHO_p1.0NW_023666041148,324,605 - 148,352,750 (+)NCBI
Hesx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462482274,344 - 102,484 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005317230   ⟹   XP_005317287
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118174,407,622 - 174,410,088 (-)NCBI
SpeTri2.0NW_0049364737,545,982 - 7,548,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361323   ⟹   XP_013216777
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364737,546,176 - 7,572,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361326   ⟹   XP_013216780
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118174,407,622 - 174,433,596 (-)NCBI
SpeTri2.0NW_0049364737,546,176 - 7,572,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289783   ⟹   XP_040145717
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118174,407,622 - 174,433,600 (-)NCBI
RefSeq Acc Id: XM_040289784   ⟹   XP_040145718
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118174,407,622 - 174,433,596 (-)NCBI
RefSeq Acc Id: XM_040289785   ⟹   XP_040145719
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118174,407,622 - 174,433,596 (-)NCBI
RefSeq Acc Id: XM_040289786   ⟹   XP_040145720
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118174,407,622 - 174,433,673 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005317287   ⟸   XM_005317230
- Peptide Label: isoform X3
- UniProtKB: I3LWH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216780   ⟸   XM_013361326
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013216777   ⟸   XM_013361323
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040145720   ⟸   XM_040289786
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040145717   ⟸   XM_040289783
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040145719   ⟸   XM_040289785
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040145718   ⟸   XM_040289784
- Peptide Label: isoform X4
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000375 ENTREZGENE
Ensembl Protein ENSSTOP00000000334 ENTREZGENE
NCBI Gene Hesx1 ENTREZGENE
UniProt I3LWH8 ENTREZGENE