LOC101975448 (protein argonaute-1) - Rat Genome Database

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Gene: LOC101975448 (protein argonaute-1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101975448 (Ensembl: AGO1)
Name: protein argonaute-1
RGD ID: 12682821
Description: ENCODES a protein that exhibits core promoter sequence-specific DNA binding (inferred); double-stranded RNA binding (inferred); miRNA binding (inferred); INVOLVED IN miRNA processing (inferred); miRNA-mediated gene silencing by inhibition of translation (inferred); negative regulation of angiogenesis (inferred); FOUND IN cytoplasm (inferred); cytoplasmic ribonucleoprotein granule (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ago1; argonaute RISC catalytic component 1
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,574,222 - 52,611,214 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,399,011 - 18,436,001 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,398,996 - 18,436,001 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010858   ⟹   ENSSTOP00000009740
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647418,403,838 - 18,431,371 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000041451   ⟹   ENSSTOP00000029219
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647418,399,011 - 18,436,001 (+)Ensembl
RefSeq Acc Id: XM_005317806   ⟹   XP_005317863
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,574,222 - 52,611,214 (+)NCBI
SpeTri2.0NW_00493647418,398,996 - 18,436,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735521   ⟹   XP_021591196
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,582,708 - 52,611,214 (+)NCBI
SpeTri2.0NW_00493647418,407,567 - 18,436,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288371   ⟹   XP_040144305
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,574,266 - 52,611,214 (+)NCBI
RefSeq Acc Id: XM_040288372   ⟹   XP_040144306
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,582,708 - 52,611,214 (+)NCBI
RefSeq Acc Id: XR_005735099
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505852,574,264 - 52,611,214 (+)NCBI
RefSeq Acc Id: XP_005317863   ⟸   XM_005317806
- Peptide Label: isoform X2
- UniProtKB: A0A287D6Q3 (UniProtKB/TrEMBL),   I3MG84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591196   ⟸   XM_021735521
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040144305   ⟸   XM_040288371
- Peptide Label: isoform X1
- UniProtKB: I3MG84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144306   ⟸   XM_040288372
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000029219   ⟸   ENSSTOT00000041451
RefSeq Acc Id: ENSSTOP00000009740   ⟸   ENSSTOT00000010858
Protein Domains
PAZ   Piwi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010857 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010858.3 UniProtKB/TrEMBL
  ENSSTOT00000041451.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro ArgoL1 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  Argonaute_Mid_dom UniProtKB/TrEMBL
  Argonaute_N UniProtKB/TrEMBL
  PAZ_dom UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
  Piwi_ago-like UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
NCBI Gene LOC101975448 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/TrEMBL
  PROTEIN ARGONAUTE-1 UniProtKB/TrEMBL
Pfam ArgoL1 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  ArgoMid UniProtKB/TrEMBL
  ArgoN UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
PROSITE PAZ UniProtKB/TrEMBL
  PIWI UniProtKB/TrEMBL
SMART DUF1785 UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
Superfamily-SCOP SSF101690 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A287D6Q3 ENTREZGENE, UniProtKB/TrEMBL
  I3MG84 ENTREZGENE, UniProtKB/TrEMBL